Aliases for SLC35E1 Gene

Aliases for SLC35E1 Gene

  • Solute Carrier Family 35 Member E1 2 3 4 5
  • Solute Carrier Family 35, Member E1 2

External Ids for SLC35E1 Gene

Previous GeneCards Identifiers for SLC35E1 Gene

  • GC19M016507
  • GC19M016523
  • GC19M016522
  • GC19M016660
  • GC19M016229

Summaries for SLC35E1 Gene

GeneCards Summary for SLC35E1 Gene

SLC35E1 (Solute Carrier Family 35 Member E1) is a Protein Coding gene. An important paralog of this gene is SLC35E2B.

UniProtKB/Swiss-Prot Summary for SLC35E1 Gene

Additional gene information for SLC35E1 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC35E1 Gene

Genomics for SLC35E1 Gene

GeneHancer (GH) Regulatory Elements for SLC35E1 Gene

Promoters and enhancers for SLC35E1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC35E1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SLC35E1 gene promoter:
  • AML1a
  • CP2
  • Ik-2
  • ITF-2
  • NF-Y
  • POU2F1
  • POU2F1a
  • Roaz
  • Tal-1beta

Genomic Locations for SLC35E1 Gene

Genomic Locations for SLC35E1 Gene
chr19:16,549,831-16,572,415
(GRCh38/hg38)
Size:
22,585 bases
Orientation:
Minus strand
chr19:16,660,642-16,683,193
(GRCh37/hg19)
Size:
22,552 bases
Orientation:
Minus strand

Genomic View for SLC35E1 Gene

Genes around SLC35E1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC35E1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC35E1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC35E1 Gene

Proteins for SLC35E1 Gene

  • Protein details for SLC35E1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96K37-S35E1_HUMAN
    Recommended name:
    Solute carrier family 35 member E1
    Protein Accession:
    Q96K37
    Secondary Accessions:
    • Q8NBQ2
    • Q96JV7

    Protein attributes for SLC35E1 Gene

    Size:
    410 amino acids
    Molecular mass:
    44773 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14557.1; Type=Frameshift; Positions=372, 384; Evidence={ECO:0000305}; Sequence=AAH62562.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55306.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55410.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC11565.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC35E1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC35E1 Gene

Post-translational modifications for SLC35E1 Gene

  • Ubiquitination at Lys345, Lys358, and Lys367
  • Modification sites at PhosphoSitePlus

Other Protein References for SLC35E1 Gene

No data available for DME Specific Peptides for SLC35E1 Gene

Domains & Families for SLC35E1 Gene

Gene Families for SLC35E1 Gene

Protein Domains for SLC35E1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC35E1 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ14251 fis, clone OVARC1001329 (Q9H7U6_HUMAN)
  • Solute carrier family 35 member E1 (S35E1_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q96K37

UniProtKB/Swiss-Prot:

S35E1_HUMAN :
  • Belongs to the TPT transporter family. SLC35E subfamily.
Family:
  • Belongs to the TPT transporter family. SLC35E subfamily.
genes like me logo Genes that share domains with SLC35E1: view

Function for SLC35E1 Gene

Molecular function for SLC35E1 Gene

UniProtKB/Swiss-Prot Function:
Putative transporter.

Phenotypes From GWAS Catalog for SLC35E1 Gene

Gene Ontology (GO) - Molecular Function for SLC35E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015297 antiporter activity IBA 21873635
GO:0022857 transmembrane transporter activity IBA 21873635
genes like me logo Genes that share ontologies with SLC35E1: view
genes like me logo Genes that share phenotypes with SLC35E1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SLC35E1

CRISPR Products

miRNA for SLC35E1 Gene

miRTarBase miRNAs that target SLC35E1

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SLC35E1 Gene

Localization for SLC35E1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC35E1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC35E1 gene
Compartment Confidence
golgi apparatus 4
plasma membrane 3
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SLC35E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC35E1: view

Pathways & Interactions for SLC35E1 Gene

PathCards logo

SuperPathways for SLC35E1 Gene

No Data Available

Interacting Proteins for SLC35E1 Gene

Gene Ontology (GO) - Biological Process for SLC35E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC35E1: view

No data available for Pathways by source and SIGNOR curated interactions for SLC35E1 Gene

Drugs & Compounds for SLC35E1 Gene

No Compound Related Data Available

Transcripts for SLC35E1 Gene

mRNA/cDNA for SLC35E1 Gene

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC35E1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c · 9d
SP1: - - - -
SP2: - - - - -
SP3: - - -
SP4: - -
SP5: -
SP6: - - -

Relevant External Links for SLC35E1 Gene

GeneLoc Exon Structure for
SLC35E1
ECgene alternative splicing isoforms for
SLC35E1

Expression for SLC35E1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC35E1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SLC35E1 Gene

This gene is overexpressed in Placenta (13.3), Breast (7.3), and Monocytes (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SLC35E1 Gene



Protein tissue co-expression partners for SLC35E1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of SLC35E1 Gene:

SLC35E1

SOURCE GeneReport for Unigene cluster for SLC35E1 Gene:

Hs.620596

Evidence on tissue expression from TISSUES for SLC35E1 Gene

  • Nervous system(2.1)
genes like me logo Genes that share expression patterns with SLC35E1: view

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC35E1 Gene

Orthologs for SLC35E1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SLC35E1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC35E1 33 32
  • 99.82 (n)
OneToOne
dog
(Canis familiaris)
Mammalia SLC35E1 33 32
  • 92.5 (n)
OneToOne
cow
(Bos Taurus)
Mammalia SLC35E1 33 32
  • 90.66 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Slc35e1 17 33 32
  • 86.67 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SLC35E1 33
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc35e1 32
  • 85.63 (n)
oppossum
(Monodelphis domestica)
Mammalia SLC35E1 33
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC35E1 33 32
  • 77.78 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SLC35E1 33
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc35e1 32
  • 74.13 (n)
Str.215 32
African clawed frog
(Xenopus laevis)
Amphibia Xl.11369 32
zebrafish
(Danio rerio)
Actinopterygii slc35e1 33 32
  • 70.51 (n)
OneToOne
Dr.3762 32
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000544 32
  • 58.28 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG14621 33 32
  • 57.08 (n)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFR543C 32
  • 47.49 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F08569g 32
  • 40.44 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SLY41 32
  • 38.65 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons GPT1 32
  • 47.17 (n)
rice
(Oryza sativa)
Liliopsida Os08g0187800 32
  • 45.62 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 33
  • 53 (a)
OneToMany
bread mold
(Neurospora crassa)
Ascomycetes NCU05453 32
  • 47.62 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC83.11 32
  • 40.14 (n)
Species where no ortholog for SLC35E1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC35E1 Gene

ENSEMBL:
Gene Tree for SLC35E1 (if available)
TreeFam:
Gene Tree for SLC35E1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for SLC35E1: view image

Paralogs for SLC35E1 Gene

(1) SIMAP similar genes for SLC35E1 Gene using alignment to 4 proteins:

  • S35E1_HUMAN
  • C9JK45_HUMAN
  • H7C1I0_HUMAN
  • Q9H7U6_HUMAN

Pseudogenes.org Pseudogenes for SLC35E1 Gene

genes like me logo Genes that share paralogs with SLC35E1: view

Variants for SLC35E1 Gene

Sequence variations from dbSNP and Humsavar for SLC35E1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000004711 -- 16,574,019(-) C/G/T upstream_transcript_variant
rs1000093968 -- 16,571,540(-) A/G coding_sequence_variant, missense_variant
rs1000141944 -- 16,574,272(-) T/A/G upstream_transcript_variant
rs1000257632 -- 16,570,946(-) A/C intron_variant
rs1000286888 -- 16,564,772(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC35E1 Gene

Variant ID Type Subtype PubMed ID
nsv510757 CNV deletion 20534489

Variation tolerance for SLC35E1 Gene

Residual Variation Intolerance Score: 25.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.68; 14.52% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SLC35E1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC35E1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC35E1 Gene

Disorders for SLC35E1 Gene

Additional Disease Information for SLC35E1

No disorders were found for SLC35E1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC35E1 Gene

Publications for SLC35E1 Gene

  1. Signal sequence and keyword trap in silico for selection of full-length human cDNAs encoding secretion or membrane proteins from oligo-capped cDNA libraries. (PMID: 16303743) Otsuki T … Isogai T (DNA research : an international journal for rapid publication of reports on genes and genomes 2005) 3 4 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 56
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  4. The STUbL RNF4 regulates protein group SUMOylation by targeting the SUMO conjugation machinery. (PMID: 29180619) Kumar R … Vertegaal ACO (Nature communications 2017) 3 56
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 56

Products for SLC35E1 Gene

Sources for SLC35E1 Gene