Aliases for SLC2A1-AS1 Gene

Subcategory (RNA class) for SLC2A1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SLC2A1-AS1 Gene

  • SLC2A1 Antisense RNA 1 2 3 5
  • SLC2A1-AS1 2 5 165
  • SLC2A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG001221.2 91
  • HSALNG0003053 164

External Ids for SLC2A1-AS1 Gene

Previous GeneCards Identifiers for SLC2A1-AS1 Gene

  • GC01P043427

Summaries for SLC2A1-AS1 Gene

GeneCards Summary for SLC2A1-AS1 Gene

SLC2A1-AS1 (SLC2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SLC2A1-AS1 include Cerebral Lymphoma.

Rfam classification for SLC2A1-AS1 Gene

Additional gene information for SLC2A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SLC2A1-AS1 Gene

Genomics for SLC2A1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC2A1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC2A1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC2A1-AS1 Gene

Genomic Locations for SLC2A1-AS1 Gene
chr1:42,959,046-43,196,506
(GRCh38/hg38)
Size:
237,461 bases
Orientation:
Plus strand
chr1:43,424,720-43,449,029
(GRCh37/hg19)
Size:
24,310 bases
Orientation:
Plus strand

Genomic View for SLC2A1-AS1 Gene

Genes around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track
SLC2A1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SLC2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC2A1-AS1 Gene

Proteins for SLC2A1-AS1 Gene

Post-translational modifications for SLC2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC2A1-AS1 Gene

Domains & Families for SLC2A1-AS1 Gene

Gene Families for SLC2A1-AS1 Gene

genes like me logo Genes that share domains with SLC2A1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC2A1-AS1 Gene

Function for SLC2A1-AS1 Gene

Phenotypes From GWAS Catalog for SLC2A1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC2A1-AS1 Gene

Localization for SLC2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC2A1-AS1 Gene

Pathways & Interactions for SLC2A1-AS1 Gene

PathCards logo

SuperPathways for SLC2A1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC2A1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC2A1-AS1 Gene

Drugs & Compounds for SLC2A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC2A1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SLC2A1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000041546A_9606 lncRNA 1124 4

Ensembl: ENST00000431759 (view in UCSC) ,

LncBook: HSALNT0005808,

LNCipedia: SLC2A1-AS1:1,

NONCODE: NONHSAT002769.2,

URS000075D721_9606 lncRNA 1124 2

HGNC: 44187,

RefSeq: NR_033967,

URS0000EF5B00_9606 lncRNA 1758 1

Ensembl: ENST00000653200 (view in UCSC) ,

URS0000EEC9C7_9606 lncRNA 1535 1

Ensembl: ENST00000664148 (view in UCSC) ,

URS000005AFB9_9606 lncRNA 3075 3

LncBook: HSALNT0005818,

LNCipedia: SLC2A1-AS1:13, SLC2A1-AS1:2,

NONCODE: NONHSAT002771.2,

SLC2A1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SLC2A1-AS1 Gene

3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC2A1-AS1 Gene

No ASD Table

Relevant External Links for SLC2A1-AS1 Gene

GeneLoc Exon Structure for
SLC2A1-AS1

Expression for SLC2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC2A1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC2A1-AS1

SOURCE GeneReport for Unigene cluster for SLC2A1-AS1 Gene:

Hs.260928
genes like me logo Genes that share expression patterns with SLC2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC2A1-AS1 Gene

Orthologs for SLC2A1-AS1 Gene

Evolution for SLC2A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC2A1-AS1 (if available)
TreeFam:
Gene Tree for SLC2A1-AS1 (if available)

No data available for Orthologs for SLC2A1-AS1 Gene

Paralogs for SLC2A1-AS1 Gene

No data available for Paralogs for SLC2A1-AS1 Gene

Variants for SLC2A1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SLC2A1-AS1 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
rs3754226 Benign: Dystonia; GLUT1 deficiency syndrome 42,959,141(+) C/G NON_CODING_TRANSCRIPT_VARIANT
rs867977523 Uncertain Significance: Dystonia; GLUT1 deficiency syndrome 42,959,075(+) G/C NON_CODING_TRANSCRIPT_VARIANT
rs886046346 Uncertain Significance: Dystonia; GLUT1 deficiency syndrome 42,959,134(+) C/A NON_CODING_TRANSCRIPT_VARIANT
rs886046347 Uncertain Significance: Dystonia; GLUT1 deficiency syndrome 42,959,161(+) C/G NON_CODING_TRANSCRIPT_VARIANT

Additional dbSNP identifiers (rs#s) for SLC2A1-AS1 Gene

Additional Variant Information for SLC2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC2A1-AS1 Gene

Disorders for SLC2A1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC2A1-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
cerebral lymphoma
  • brain primary lymphoma
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SLC2A1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC2A1-AS1 Gene

Publications for SLC2A1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for SLC2A1-AS1 Gene

Sources for SLC2A1-AS1 Gene