Aliases for SLC2A1-AS1 Gene

Subcategory (RNA class) for SLC2A1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SLC2A1-AS1 Gene

  • SLC2A1 Antisense RNA 1 2 3 5
  • SLC2A1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SLC2A1-AS1 2 170
  • NONHSAG001221 94
  • HSALNG0003053 169

External Ids for SLC2A1-AS1 Gene

Previous GeneCards Identifiers for SLC2A1-AS1 Gene

  • GC01P043427

Summaries for SLC2A1-AS1 Gene

GeneCards Summary for SLC2A1-AS1 Gene

SLC2A1-AS1 (SLC2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SLC2A1-AS1 include Glucose Transporter Type 1 Deficiency Syndrome and Glut1 Deficiency Syndrome 1.

Rfam classification for SLC2A1-AS1 Gene

Additional gene information for SLC2A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SLC2A1-AS1 Gene

Genomics for SLC2A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC2A1-AS1 Gene

Promoters and enhancers for SLC2A1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC2A1-AS1 Gene

Genomic Locations for SLC2A1-AS1 Gene
chr1:42,959,046-43,196,506
(GRCh38/hg38)
Size:
237,461 bases
Orientation:
Plus strand
chr1:43,424,720-43,449,029
(GRCh37/hg19)
Size:
24,310 bases
Orientation:
Plus strand

Genomic View for SLC2A1-AS1 Gene

Genes around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC2A1-AS1 Gene

Proteins for SLC2A1-AS1 Gene

Post-translational modifications for SLC2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC2A1-AS1 Gene

Domains & Families for SLC2A1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC2A1-AS1 Gene

Function for SLC2A1-AS1 Gene

Phenotypes From GWAS Catalog for SLC2A1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC2A1-AS1 Gene

Localization for SLC2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC2A1-AS1 Gene

Pathways & Interactions for SLC2A1-AS1 Gene

PathCards logo

SuperPathways for SLC2A1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC2A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC2A1-AS1 Gene

Drugs & Compounds for SLC2A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC2A1-AS1 Gene

mRNA/cDNA for SLC2A1-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SLC2A1-AS1 Gene

No ASD Table

Relevant External Links for SLC2A1-AS1 Gene

GeneLoc Exon Structure for
SLC2A1-AS1
ECgene alternative splicing isoforms for
SLC2A1-AS1

Expression for SLC2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC2A1-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC2A1-AS1 Gene:

Hs.260928
genes like me logo Genes that share expression patterns with SLC2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC2A1-AS1 Gene

Orthologs for SLC2A1-AS1 Gene

Evolution for SLC2A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC2A1-AS1 (if available)
TreeFam:
Gene Tree for SLC2A1-AS1 (if available)

No data available for Orthologs for SLC2A1-AS1 Gene

Paralogs for SLC2A1-AS1 Gene

No data available for Paralogs for SLC2A1-AS1 Gene

Variants for SLC2A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC2A1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs114514007 likely-benign, Dystonia, Glucose transporter type 1 deficiency syndrome 42,958,841(+) C/G upstream_transcript_variant
rs11537640 benign, Glucose transporter type 1 deficiency syndrome, Dystonia 42,958,848(+) T/A/G upstream_transcript_variant
rs28365848 benign, Dystonia, Glucose transporter type 1 deficiency syndrome 42,959,041(+) T/ upstream_transcript_variant
rs375001117 benign, likely-benign, not specified, Glucose transporter type 1 deficiency syndrome, Dystonia 42,958,677(+) C/G upstream_transcript_variant
rs3754226 benign, Dystonia, Glucose transporter type 1 deficiency syndrome 42,959,141(+) C/G non_coding_transcript_variant

Additional Variant Information for SLC2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC2A1-AS1 Gene

Disorders for SLC2A1-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for SLC2A1-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
glucose transporter type 1 deficiency syndrome
  • glucose transport defect, blood-brain barrier
glut1 deficiency syndrome 1
  • glut1ds1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SLC2A1-AS1

genes like me logo Genes that share disorders with SLC2A1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC2A1-AS1 Gene

Publications for SLC2A1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

Products for SLC2A1-AS1 Gene

Sources for SLC2A1-AS1 Gene