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Aliases for SLC2A1-AS1 Gene

Subcategory (RNA class) for SLC2A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC2A1-AS1 Gene

  • SLC2A1 Antisense RNA 1 2 3 5
  • SLC2A1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC2A1-AS1 Gene

Previous GeneCards Identifiers for SLC2A1-AS1 Gene

  • GC01P043427

Summaries for SLC2A1-AS1 Gene

GeneCards Summary for SLC2A1-AS1 Gene

SLC2A1-AS1 (SLC2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC2A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC2A1-AS1 Gene

Genomics for SLC2A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC2A1-AS1 Gene

Promoters and enhancers for SLC2A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I042949 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.2 -2.2 -2234 15.6 FEZF1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D ZNF585B GLIS1 RCOR2 SLC2A1 SLC2A1-AS1 SZT2 ARTN PPIH P3H1 MED8 RNU6-880P ERMAP LOC101929609
GH01I042929 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 41.7 -19.7 -19686 19 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 IRF4 ZNF766 SLC2A1-AS1 HYI SZT2 ARTN RNU6-880P FOXJ3 C1orf210 ERMAP CCDC30 YBX1
GH01I042965 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 43.3 +7.8 7848 2.9 PKNOX1 ATF1 ARNT SIN3A FEZF1 TCF12 ZNF121 ZNF766 GLIS2 ATF7 SLC2A1-AS1 RNU6-880P HYI SLC2A1 CCDC30 ENSG00000283973
GH01I042971 Enhancer 0.9 Ensembl ENCODE dbSUPER 43.2 +13.1 13092 1.2 FOSL1 JUND POLR2A IKZF1 FOSL2 FOS SLC2A1-AS1 CFAP57 EBNA1BP2 ENSG00000283973 RNU6-880P
GH01I042968 Enhancer 0.5 dbSUPER 20 +9.7 9715 0.7 ZNF664 ZNF316 CEBPB TRIM28 SLC2A1-AS1 RNU6-880P C1orf210 ENSG00000283973
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC2A1-AS1 Gene

Genomic Locations for SLC2A1-AS1 Gene
chr1:42,959,049-42,983,358
(GRCh38/hg38)
Size:
24,310 bases
Orientation:
Plus strand
chr1:43,424,720-43,449,029
(GRCh37/hg19)

Genomic View for SLC2A1-AS1 Gene

Genes around SLC2A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC2A1-AS1 Gene

Proteins for SLC2A1-AS1 Gene

Post-translational modifications for SLC2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC2A1-AS1 Gene

Domains & Families for SLC2A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC2A1-AS1 Gene

Function for SLC2A1-AS1 Gene

Phenotypes From GWAS Catalog for SLC2A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC2A1-AS1 Gene

Localization for SLC2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC2A1-AS1 Gene

Pathways & Interactions for SLC2A1-AS1 Gene

SuperPathways for SLC2A1-AS1 Gene

No Data Available

Interacting Proteins for SLC2A1-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC2A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC2A1-AS1 Gene

Drugs & Compounds for SLC2A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC2A1-AS1 Gene

mRNA/cDNA for SLC2A1-AS1 Gene

(2) Additional mRNA sequences :
(20) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC2A1-AS1 Gene

SLC2A1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC2A1-AS1 Gene

No ASD Table

Relevant External Links for SLC2A1-AS1 Gene

GeneLoc Exon Structure for
SLC2A1-AS1
ECgene alternative splicing isoforms for
SLC2A1-AS1

Expression for SLC2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC2A1-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC2A1-AS1 Gene:

Hs.260928
genes like me logo Genes that share expression patterns with SLC2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC2A1-AS1 Gene

Orthologs for SLC2A1-AS1 Gene

Evolution for SLC2A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC2A1-AS1 (if available)
TreeFam:
Gene Tree for SLC2A1-AS1 (if available)

No data available for Orthologs for SLC2A1-AS1 Gene

Paralogs for SLC2A1-AS1 Gene

No data available for Paralogs for SLC2A1-AS1 Gene

Variants for SLC2A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC2A1-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs114514007 likely-benign, Dystonia, Glucose transporter type 1 deficiency syndrome 42,958,841(+) C/G upstream_transcript_variant
rs11537640 benign, Glucose transporter type 1 deficiency syndrome, Dystonia 42,958,848(+) T/A/G upstream_transcript_variant
rs28365848 benign, Dystonia, Glucose transporter type 1 deficiency syndrome 42,959,041(+) T/ upstream_transcript_variant
rs375001117 benign, likely-benign, not specified, Glucose transporter type 1 deficiency syndrome, Dystonia 42,958,677(+) C/G upstream_transcript_variant
rs3754226 benign, Dystonia, Glucose transporter type 1 deficiency syndrome 42,959,141(+) C/G non_coding_transcript_variant

Additional Variant Information for SLC2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC2A1-AS1 Gene

Disorders for SLC2A1-AS1 Gene

Additional Disease Information for SLC2A1-AS1

No disorders were found for SLC2A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC2A1-AS1 Gene

Publications for SLC2A1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SLC2A1-AS1 Gene

Sources for SLC2A1-AS1 Gene

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