Aliases for SLC26A9-AS1 Gene

Subcategory (RNA class) for SLC26A9-AS1 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for SLC26A9-AS1 Gene

  • SLC26A9 And RAB7B Antisense RNA 1 2 3
  • NONHSAG004075 94

External Ids for SLC26A9-AS1 Gene

Summaries for SLC26A9-AS1 Gene

GeneCards Summary for SLC26A9-AS1 Gene

SLC26A9-AS1 (SLC26A9 And RAB7B Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC26A9-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC26A9-AS1 Gene

Genomics for SLC26A9-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC26A9-AS1 Gene

Promoters and enhancers for SLC26A9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J205935 Promoter/Enhancer 0.5 EPDnew dbSUPER 750.6 +1.0 1013 0.1 ENSG00000227687 SLC26A9-AS1 SLC26A9 RAB29
GH01J205930 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.6 -2.5 -2513 6.8 POLR2A HLF ZNF148 MAFK CEBPG FOSL2 HMG20B CREB1 CEBPA SMARCC1 piR-52079-021 PM20D1 AVPR1B ENSG00000226780 RAB29 RNU6-418P ELK4 ENSG00000227687 SLC26A9-AS1 SLC26A9
GH01J205936 Enhancer 0.7 Ensembl dbSUPER 0.6 +2.2 2187 2.2 PRDM1 CEBPB JUN RCOR1 JUND MAZ SCRT2 SP1 TCF7L2 FOSL2 ENSG00000227687 PM20D1 RAB29 ELK4 SLC26A9-AS1 SLC26A9
GH01J205939 Enhancer 1 Ensembl ENCODE 0.4 +5.1 5130 2.3 ZNF362 SP1 ZNF148 ZNF384 SP7 ZNF548 KLF14 CREB1 PRDM10 TARDBP ELK4 PM20D1 RAB29 ENSG00000227687 SLC26A9 SLC26A9-AS1
GH01J205950 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +16.5 16488 3.2 SCRT2 USF2 FOSL1 CREM BHLHE40 PM20D1 SLC26A9 LOC103021295 SLC26A9-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC26A9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC26A9-AS1 Gene

Genomic Locations for SLC26A9-AS1 Gene
chr1:205,934,913-205,978,095
(GRCh38/hg38)
Size:
43,183 bases
Orientation:
Plus strand

Genomic View for SLC26A9-AS1 Gene

Genes around SLC26A9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC26A9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC26A9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC26A9-AS1 Gene

Proteins for SLC26A9-AS1 Gene

Post-translational modifications for SLC26A9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC26A9-AS1 Gene

Domains & Families for SLC26A9-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC26A9-AS1 Gene

Function for SLC26A9-AS1 Gene

Phenotypes From GWAS Catalog for SLC26A9-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC26A9-AS1 Gene

Localization for SLC26A9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC26A9-AS1 Gene

Pathways & Interactions for SLC26A9-AS1 Gene

PathCards logo

SuperPathways for SLC26A9-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC26A9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC26A9-AS1 Gene

Drugs & Compounds for SLC26A9-AS1 Gene

No Compound Related Data Available

Transcripts for SLC26A9-AS1 Gene

mRNA/cDNA for SLC26A9-AS1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) NONCODE transcripts :
(2) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC26A9-AS1 Gene

No ASD Table

Relevant External Links for SLC26A9-AS1 Gene

GeneLoc Exon Structure for
SLC26A9-AS1
ECgene alternative splicing isoforms for
SLC26A9-AS1

Expression for SLC26A9-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC26A9-AS1 Gene

Orthologs for SLC26A9-AS1 Gene

No data available for Orthologs and Evolution for SLC26A9-AS1 Gene

Paralogs for SLC26A9-AS1 Gene

No data available for Paralogs for SLC26A9-AS1 Gene

Variants for SLC26A9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC26A9-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000052645 -- 205,950,715(+) G/A intron_variant
rs1000104528 -- 205,949,682(+) G/A intron_variant
rs1000293247 -- 205,933,653(+) G/A upstream_transcript_variant
rs1000404032 -- 205,976,981(+) G/T non_coding_transcript_variant
rs1000433707 -- 205,976,688(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC26A9-AS1 Gene

Variant ID Type Subtype PubMed ID
esv29758 CNV gain 19812545
esv3353279 CNV duplication 20981092
nsv470777 CNV loss 18288195
nsv832392 CNV gain 17160897

Additional Variant Information for SLC26A9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC26A9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC26A9-AS1 Gene

Disorders for SLC26A9-AS1 Gene

No disorders were found for SLC26A9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC26A9-AS1 Gene

Publications for SLC26A9-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56

No data available for External Links for SLC26A9-AS1 Gene

Products for SLC26A9-AS1 Gene

Sources for SLC26A9-AS1 Gene