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Aliases for SLC26A4-AS1 Gene

Subcategory (RNA class) for SLC26A4-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SLC26A4-AS1 Gene

  • SLC26A4 Antisense RNA 1 2 3 5
  • SLC26A4 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SLC26A4-AS1 Gene

Previous GeneCards Identifiers for SLC26A4-AS1 Gene

  • GC07M107296

Summaries for SLC26A4-AS1 Gene

GeneCards Summary for SLC26A4-AS1 Gene

SLC26A4-AS1 (SLC26A4 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SLC26A4-AS1 include Retinitis Pigmentosa 11.

Additional gene information for SLC26A4-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC26A4-AS1 Gene

Genomics for SLC26A4-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC26A4-AS1 Gene

Promoters and enhancers for SLC26A4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I107660 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 550.8 +0.6 624 1.5 ARID4B KLF17 SIN3A ZNF2 RAD21 ZNF335 ZNF121 GLIS2 SCRT2 ZEB2 SLC26A4 SLC26A4-AS1
GH07I107661 Promoter 0.6 EPDnew 550.8 +1.6 1616 0.1 EZH2 SLC26A4 SLC26A4-AS1 LOC105375443
GH07I107559 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +99.6 99560 6.8 HDGF PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B COG5 DUS4L ENSG00000272854 ENSG00000238832 SLC26A4 SLC26A4-AS1 HBP1 GC07M107524
GH07I107742 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.7 -82.3 -82348 4.8 CLOCK DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 MEF2D GLIS1 LOC101927974 CBLL1 HBP1 SLC26A4-AS1 SLC26A4 COG5 DUS4L
GH07I107594 Enhancer 1 Ensembl ENCODE 10.5 +66.2 66182 3.7 PKNOX1 MZF1 FEZF1 RFX5 ZNF366 ZSCAN5C OVOL3 CEBPB ZNF398 ZEB2 PIR46022 COG5 SLC26A4 SLC26A4-AS1 DUS4L ENSG00000238832 BCAP29
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC26A4-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC26A4-AS1 Gene

Genomic Locations for SLC26A4-AS1 Gene
chr7:107,653,968-107,662,151
(GRCh38/hg38)
Size:
8,184 bases
Orientation:
Minus strand
chr7:107,294,421-107,302,596
(GRCh37/hg19)

Genomic View for SLC26A4-AS1 Gene

Genes around SLC26A4-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC26A4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC26A4-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC26A4-AS1 Gene

Proteins for SLC26A4-AS1 Gene

Post-translational modifications for SLC26A4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC26A4-AS1 Gene

Domains & Families for SLC26A4-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC26A4-AS1 Gene

Function for SLC26A4-AS1 Gene

Phenotypes From GWAS Catalog for SLC26A4-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC26A4-AS1 Gene

Localization for SLC26A4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC26A4-AS1 Gene

Pathways & Interactions for SLC26A4-AS1 Gene

SuperPathways for SLC26A4-AS1 Gene

No Data Available

Interacting Proteins for SLC26A4-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC26A4-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC26A4-AS1 Gene

Drugs & Compounds for SLC26A4-AS1 Gene

No Compound Related Data Available

Transcripts for SLC26A4-AS1 Gene

mRNA/cDNA for SLC26A4-AS1 Gene

(6) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SLC26A4-AS1 Gene

SLC26A4 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC26A4-AS1 Gene

No ASD Table

Relevant External Links for SLC26A4-AS1 Gene

GeneLoc Exon Structure for
SLC26A4-AS1
ECgene alternative splicing isoforms for
SLC26A4-AS1

Expression for SLC26A4-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC26A4-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC26A4-AS1 Gene

This gene is overexpressed in Thyroid (x20.5), Brain - Anterior cingulate cortex (BA24) (x8.9), Brain - Frontal Cortex (BA9) (x6.8), and Brain - Cortex (x5.0).

SOURCE GeneReport for Unigene cluster for SLC26A4-AS1 Gene:

Hs.512611
genes like me logo Genes that share expression patterns with SLC26A4-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC26A4-AS1 Gene

Orthologs for SLC26A4-AS1 Gene

Evolution for SLC26A4-AS1 Gene

ENSEMBL:
Gene Tree for SLC26A4-AS1 (if available)
TreeFam:
Gene Tree for SLC26A4-AS1 (if available)

No data available for Orthologs for SLC26A4-AS1 Gene

Paralogs for SLC26A4-AS1 Gene

No data available for Paralogs for SLC26A4-AS1 Gene

Variants for SLC26A4-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC26A4-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1057516634 likely-pathogenic, Pendred's syndrome 107,661,696(-) A/ non_coding_transcript_variant
rs1057516658 pathogenic, Pendred's syndrome 107,663,380(-) G/A upstream_transcript_variant
rs1057516953 pathogenic, Pendred's syndrome 107,663,412(-) C/T upstream_transcript_variant
rs1057518810 likely-pathogenic, Hearing impairment 107,663,430(-) T/C upstream_transcript_variant
rs111033200 likely-pathogenic, Enlarged vestibular aqueduct syndrome, Pendred's syndrome 107,663,301(-) C/A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC26A4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3614462 CNV gain 21293372

Additional Variant Information for SLC26A4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC26A4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC26A4-AS1 Gene

Disorders for SLC26A4-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC26A4-AS1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
retinitis pigmentosa 11
  • rp11
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SLC26A4-AS1

genes like me logo Genes that share disorders with SLC26A4-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC26A4-AS1 Gene

Publications for SLC26A4-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for SLC26A4-AS1 Gene

Sources for SLC26A4-AS1 Gene

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