Aliases for SLC25A48-AS1 Gene

Subcategory (RNA class) for SLC25A48-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SLC25A48-AS1 Gene

  • SLC25A48 Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1959 2 3
  • LINC01959 3 168
  • NONHSAG041615 92
  • HSALNG0045051 167
  • SLC25A48-AS1 2

External Ids for SLC25A48-AS1 Gene

Previous HGNC Symbols for SLC25A48-AS1 Gene

  • LINC01959

Summaries for SLC25A48-AS1 Gene

GeneCards Summary for SLC25A48-AS1 Gene

SLC25A48-AS1 (SLC25A48 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC25A48-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC25A48-AS1 Gene

Genomics for SLC25A48-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC25A48-AS1 Gene

Promoters and enhancers for SLC25A48-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J135653 Enhancer 0.4 Ensembl ENCODE 500.7 -1.0 -961 3 HLF SLC25A48-AS1 SLC25A48 DDX46 lnc-CXCL14-2 RF00017-4906
GH05J135650 Enhancer 0.5 ENCODE 0.7 +2.7 2722 1.7 ZIC2 FOS STAT3 NFIB PRDM10 MYC ENSG00000250167 DDX46 SLC25A48-AS1 piR-48324 SLC25A48 RF00017-4906
GH05J135660 Enhancer 0.6 Ensembl 0.4 -7.7 -7666 2 EP300 ZIC2 ZNF423 OSR2 REST IKZF3 CTCF ZNF664 FEZF1 GLIS1 CXCL14 SLC25A48-AS1 lnc-CXCL14-2 SLC25A48 RF00017-4906
GH05J135671 Enhancer 0.5 Ensembl 0.4 -17.7 -17666 1.6 CREB1 POLR2A NFIB SMARCA4 ATF2 ATF7 CXCL14 lnc-CXCL14-2 SLC25A48-AS1 SLC25A48 RF00017-4906
GH05J135647 Enhancer 0.2 Ensembl 0.4 +5.6 5634 1.4 piR-48324 DDX46 SLC25A48-AS1 lnc-TGFBI-3 SLC25A48 RF00017-4906
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A48-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A48-AS1 Gene

Genomic Locations for SLC25A48-AS1 Gene
chr5:135,648,584-135,653,935
(GRCh38/hg38)
Size:
5,352 bases
Orientation:
Minus strand
chr5:134,984,273-134,989,624
(GRCh37/hg19)
Size:
5,352 bases
Orientation:
Minus strand

Genomic View for SLC25A48-AS1 Gene

Genes around SLC25A48-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A48-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A48-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A48-AS1 Gene

Proteins for SLC25A48-AS1 Gene

Post-translational modifications for SLC25A48-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A48-AS1 Gene

Domains & Families for SLC25A48-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC25A48-AS1 Gene

Function for SLC25A48-AS1 Gene

Phenotypes for SLC25A48-AS1 Gene

GenomeRNAi human phenotypes for SLC25A48-AS1:
genes like me logo Genes that share phenotypes with SLC25A48-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A48-AS1 Gene

Localization for SLC25A48-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A48-AS1 Gene

Pathways & Interactions for SLC25A48-AS1 Gene

PathCards logo

SuperPathways for SLC25A48-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SLC25A48-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC25A48-AS1 Gene

Drugs & Compounds for SLC25A48-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A48-AS1 Gene

mRNA/cDNA for SLC25A48-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
1 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A48-AS1 Gene

No ASD Table

Relevant External Links for SLC25A48-AS1 Gene

GeneLoc Exon Structure for
SLC25A48-AS1

Expression for SLC25A48-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC25A48-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A48-AS1 Gene

Orthologs for SLC25A48-AS1 Gene

Evolution for SLC25A48-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A48-AS1 (if available)
TreeFam:
Gene Tree for SLC25A48-AS1 (if available)

No data available for Orthologs for SLC25A48-AS1 Gene

Paralogs for SLC25A48-AS1 Gene

No data available for Paralogs for SLC25A48-AS1 Gene

Variants for SLC25A48-AS1 Gene

Additional dbSNP identifiers (rs#s) for SLC25A48-AS1 Gene

Additional Variant Information for SLC25A48-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A48-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC25A48-AS1 Gene

Disorders for SLC25A48-AS1 Gene

No disorders were found for SLC25A48-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SLC25A48-AS1 Gene

Publications for SLC25A48-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54

Products for SLC25A48-AS1 Gene

Sources for SLC25A48-AS1 Gene