Aliases for SLC25A3P1 Gene

Aliases for SLC25A3P1 Gene

  • Solute Carrier Family 25 Member 3 Pseudogene 1 2 3 5
  • Solute Carrier Family 25 (Mitochondrial Carrier; Phosphate Carrier), Member 3 Pseudogene 1 2 3
  • Solute Carrier Family 24 (Sodium/Potassium/Calcium Exchanger), Member 3 Pseudogene 1 2 3
  • SLC25A3P1 5
  • FLJ40434 2

External Ids for SLC25A3P1 Gene

Previous GeneCards Identifiers for SLC25A3P1 Gene

  • GC01M053878

Summaries for SLC25A3P1 Gene

GeneCards Summary for SLC25A3P1 Gene

SLC25A3P1 (Solute Carrier Family 25 Member 3 Pseudogene 1) is a Pseudogene.

Additional gene information for SLC25A3P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC25A3P1 Gene

Genomics for SLC25A3P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC25A3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J053429 Promoter/Enhancer 1.2 EPDnew Ensembl ENCODE dbSUPER 5.1 +8.6 8617 3.6 SIN3A YY1 NRF1 CTCF SP1 POU5F1 ZSCAN4 NANOG RAD21 SCRT2 DMRTB1 HSALNG0003702 LRP8 LOC100507564 MAGOH LINC01771 RNU7-95P SLC25A3P1 piR-30444-004 lnc-GLIS1-2
GH01J053469 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 5.3 -30.6 -30563 1.2 IKZF1 ZNF600 REST CTCF SIN3A GABPB1 YY1 SKIL RAD21 ZBTB48 RNU7-95P SLC25A3P1 HSALNG0003705 DMRTB1 GLIS1
GH01J053502 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.8 -63.3 -63251 2.3 ZSCAN16 ZNF341 KLF7 KLF9 SP2 KLF16 ZSCAN5A ZBTB48 ZSCAN23 CBLL2 MAGOH GPX7 LRRC42 NDC1 DMRTB1 SLC25A3P1 HSALNG0003706 HSALNG0003713 GLIS1
GH01J053434 Enhancer 0.3 ENCODE dbSUPER 7.3 +4.9 4861 2 DMRTB1 RNU7-95P SLC25A3P1 LRRC42 HSALNG0003702 lnc-GLIS1-1 lnc-GLIS1-2 LRP8
GH01J053498 Enhancer 0.4 Ensembl 4.5 -59.2 -59181 0.8 ZIC2 MYC MAX GLIS1 SLC25A3P1 HSALNG0003706 HSALNG0003713 DMRTB1 GLIS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A3P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC25A3P1 Gene

Latest Assembly
chr1:53,413,149-53,440,020
(GRCh38/hg38)
Size:
26,872 bases
Orientation:
Minus strand

Previous Assembly
chr1:53,904,043-53,905,693
(GRCh37/hg19 by Entrez Gene)
Size:
1,651 bases
Orientation:
Minus strand

chr1:53,878,821-53,905,693
(GRCh37/hg19 by Ensembl)
Size:
26,873 bases
Orientation:
Minus strand

Genomic View for SLC25A3P1 Gene

Genes around SLC25A3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A3P1 Gene

Proteins for SLC25A3P1 Gene

Post-translational modifications for SLC25A3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A3P1 Gene

Domains & Families for SLC25A3P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC25A3P1 Gene

Function for SLC25A3P1 Gene

Phenotypes From GWAS Catalog for SLC25A3P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A3P1 Gene

Localization for SLC25A3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A3P1 Gene

Pathways & Interactions for SLC25A3P1 Gene

PathCards logo

SuperPathways for SLC25A3P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC25A3P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC25A3P1 Gene

Drugs & Compounds for SLC25A3P1 Gene

No Compound Related Data Available

Transcripts for SLC25A3P1 Gene

mRNA/cDNA for SLC25A3P1 Gene

3 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A3P1 Gene

No ASD Table

Relevant External Links for SLC25A3P1 Gene

GeneLoc Exon Structure for
SLC25A3P1

Expression for SLC25A3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC25A3P1 Gene

mRNA differential expression in normal tissues according to GTEx for SLC25A3P1 Gene

This gene is overexpressed in Testis (x47.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC25A3P1

SOURCE GeneReport for Unigene cluster for SLC25A3P1 Gene:

Hs.99394
genes like me logo Genes that share expression patterns with SLC25A3P1: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A3P1 Gene

Orthologs for SLC25A3P1 Gene

Evolution for SLC25A3P1 Gene

ENSEMBL:
Gene Tree for SLC25A3P1 (if available)
TreeFam:
Gene Tree for SLC25A3P1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SLC25A3P1

No data available for Orthologs for SLC25A3P1 Gene

Paralogs for SLC25A3P1 Gene

No data available for Paralogs for SLC25A3P1 Gene

Variants for SLC25A3P1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC25A3P1 Gene

Variant ID Type Subtype PubMed ID
nsv509269 CNV insertion 20534489

Additional Variant Information for SLC25A3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A3P1
Leiden Open Variation Database (LOVD)
SLC25A3P1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for SLC25A3P1 Gene

Disorders for SLC25A3P1 Gene

Additional Disease Information for SLC25A3P1

No disorders were found for SLC25A3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A3P1 Gene

Publications for SLC25A3P1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SLC25A3P1 Gene

Sources for SLC25A3P1 Gene