Aliases for SLC25A34-AS1 Gene

Subcategory (RNA class) for SLC25A34-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SLC25A34-AS1 Gene

  • SLC25A34 And TMEM82 Antisense RNA 1 2 3 5
  • SLC25A34-AS1 2 170
  • RP11-169K16.4 3
  • HSALNG0001107 169
  • NONHSAG000444 94

External Ids for SLC25A34-AS1 Gene

Summaries for SLC25A34-AS1 Gene

GeneCards Summary for SLC25A34-AS1 Gene

SLC25A34-AS1 (SLC25A34 And TMEM82 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC25A34-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC25A34-AS1 Gene

Genomics for SLC25A34-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC25A34-AS1 Gene

Promoters and enhancers for SLC25A34-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J015747 Enhancer 1.1 Ensembl ENCODE dbSUPER 750.6 +0.9 896 4.4 RBPJ NR2F6 ELF3 ZNF644 PRDM10 GATAD2A RXRB ZNF24 REST FOXA2 RF00017-075 SLC25A34-AS1 SLC25A34 TMEM82 CASP9 RF00017-074
GH01J015740 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.4 +7.7 7737 2.6 ZBTB40 CTCF RBPJ NR2F6 CREB1 CC2D1A DACH1 RAD21 ZNF652 ELF3 RF00017-074 TMEM82 SLC25A34 PLEKHM2 ENSG00000237938 SLC25A34-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A34-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A34-AS1 Gene

Genomic Locations for SLC25A34-AS1 Gene
chr1:15,740,051-15,749,897
(GRCh38/hg38)
Size:
9,847 bases
Orientation:
Minus strand
chr1:16,066,546-16,076,391
(GRCh37/hg19)
Size:
9,846 bases
Orientation:
Minus strand

Genomic View for SLC25A34-AS1 Gene

Genes around SLC25A34-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A34-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A34-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A34-AS1 Gene

Proteins for SLC25A34-AS1 Gene

Post-translational modifications for SLC25A34-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A34-AS1 Gene

Domains & Families for SLC25A34-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC25A34-AS1 Gene

Function for SLC25A34-AS1 Gene

Phenotypes From GWAS Catalog for SLC25A34-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A34-AS1 Gene

Localization for SLC25A34-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A34-AS1 Gene

Pathways & Interactions for SLC25A34-AS1 Gene

PathCards logo

SuperPathways for SLC25A34-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC25A34-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A34-AS1 Gene

Drugs & Compounds for SLC25A34-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A34-AS1 Gene

mRNA/cDNA for SLC25A34-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) NONCODE transcripts :
(5) RNACentral transcripts :
(2) LncBook transcripts :
(3) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A34-AS1 Gene

No ASD Table

Relevant External Links for SLC25A34-AS1 Gene

GeneLoc Exon Structure for
SLC25A34-AS1
ECgene alternative splicing isoforms for
SLC25A34-AS1

Expression for SLC25A34-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A34-AS1 Gene

Orthologs for SLC25A34-AS1 Gene

Evolution for SLC25A34-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A34-AS1 (if available)
TreeFam:
Gene Tree for SLC25A34-AS1 (if available)

No data available for Orthologs for SLC25A34-AS1 Gene

Paralogs for SLC25A34-AS1 Gene

No data available for Paralogs for SLC25A34-AS1 Gene

Variants for SLC25A34-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A34-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000433242 -- 15,751,873(-) T/G upstream_transcript_variant
rs1000512368 -- 15,742,729(-) C/T intron_variant
rs1000915865 -- 15,740,775(-) C/T intron_variant
rs1001742251 -- 15,739,975(-) G/A downstream_transcript_variant
rs1002016956 -- 15,742,473(-) C/A intron_variant

Additional Variant Information for SLC25A34-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A34-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SLC25A34-AS1 Gene

Disorders for SLC25A34-AS1 Gene

Additional Disease Information for SLC25A34-AS1

No disorders were found for SLC25A34-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A34-AS1 Gene

Publications for SLC25A34-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

Products for SLC25A34-AS1 Gene

Sources for SLC25A34-AS1 Gene