Aliases for SLC25A30-AS1 Gene

Subcategory (RNA class) for SLC25A30-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for SLC25A30-AS1 Gene

  • SLC25A30 Antisense RNA 1 2 3 5
  • SLC25A30 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SLC25A30-AS1 2 168
  • XXyac-YMR12DG2.1 3
  • NONHSAG013419 92

External Ids for SLC25A30-AS1 Gene

Previous GeneCards Identifiers for SLC25A30-AS1 Gene

  • GC13P045993

Summaries for SLC25A30-AS1 Gene

GeneCards Summary for SLC25A30-AS1 Gene

SLC25A30-AS1 (SLC25A30 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC25A30-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC25A30-AS1 Gene

Genomics for SLC25A30-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC25A30-AS1 Gene

Promoters and enhancers for SLC25A30-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J045416 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 512.5 -0.6 -561 3.2 ZBTB40 ZNF217 EP300 ZSCAN5C NRF1 POLR2G NCOR1 ZFX ZNF10 ZIC2 SLC25A30 SLC25A30-AS1 TPT1-AS1 RCN1P2
GH13J044571 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.5 -843.4 -843361 10.4 HNRNPK ZNF217 EP300 CTCF ZSCAN5C NRF1 MYC POLR2G PHF8 FOS TSC22D1 TSC22D1-AS1 RN7SL49P GPALPP1 SLC25A30-AS1 COG3 SMARCE1P5 ENOX1 NUFIP1 lnc-SMIM2-5
GH13J045338 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 11.1 -77.4 -77392 4.6 HNRNPK ZBTB40 EP300 CTCF NRF1 MYC POLR2G SP1 NCOR1 PHF8 TPT1-AS1 ENSG00000273149 COG3 TPT1 lnc-SLC25A30-4 SLC25A30 SLC25A30-AS1 RCN1P2
GH13J045395 Enhancer 0.8 Ensembl ENCODE 24.1 -23.4 -23361 6 CTCF NCOR1 ZIC2 RAD21 SMC3 MYNN EGR1 GATA2 PRDM6 GLIS1 SLC25A30-AS1 SLC25A30 PPIAP25 COG3 TPT1-AS1 RCN1P2
GH13J045444 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.8 +29.5 29507 5.7 EP300 FOXK2 POLR2G NCOR1 KDM6A TCF7 SKI TEAD1 ZBTB26 ZKSCAN8 SLC25A30 SLC25A30-AS1 TPT1-AS1 lnc-COG3-3 PPIAP25 COG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A30-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A30-AS1 Gene

Genomic Locations for SLC25A30-AS1 Gene
chr13:45,418,162-45,420,372
(GRCh38/hg38)
Size:
2,211 bases
Orientation:
Plus strand
chr13:45,992,297-45,994,506
(GRCh37/hg19)
Size:
2,210 bases
Orientation:
Plus strand

Genomic View for SLC25A30-AS1 Gene

Genes around SLC25A30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A30-AS1 Gene

Proteins for SLC25A30-AS1 Gene

Post-translational modifications for SLC25A30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A30-AS1 Gene

Domains & Families for SLC25A30-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC25A30-AS1 Gene

Function for SLC25A30-AS1 Gene

Phenotypes From GWAS Catalog for SLC25A30-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A30-AS1 Gene

Localization for SLC25A30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A30-AS1 Gene

Pathways & Interactions for SLC25A30-AS1 Gene

PathCards logo

SuperPathways for SLC25A30-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SLC25A30-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC25A30-AS1 Gene

Drugs & Compounds for SLC25A30-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A30-AS1 Gene

mRNA/cDNA for SLC25A30-AS1 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A30-AS1 Gene

No ASD Table

Relevant External Links for SLC25A30-AS1 Gene

GeneLoc Exon Structure for
SLC25A30-AS1

Expression for SLC25A30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC25A30-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC25A30-AS1

SOURCE GeneReport for Unigene cluster for SLC25A30-AS1 Gene:

Hs.658038
genes like me logo Genes that share expression patterns with SLC25A30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A30-AS1 Gene

Orthologs for SLC25A30-AS1 Gene

Evolution for SLC25A30-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A30-AS1 (if available)
TreeFam:
Gene Tree for SLC25A30-AS1 (if available)

No data available for Orthologs for SLC25A30-AS1 Gene

Paralogs for SLC25A30-AS1 Gene

No data available for Paralogs for SLC25A30-AS1 Gene

Variants for SLC25A30-AS1 Gene

Additional dbSNP identifiers (rs#s) for SLC25A30-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC25A30-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv3631957 CNV loss 21293372
nsv455875 CNV loss 19166990
nsv510579 CNV deletion 20534489
nsv561578 CNV loss 21841781

Additional Variant Information for SLC25A30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SLC25A30-AS1 Gene

Disorders for SLC25A30-AS1 Gene

Additional Disease Information for SLC25A30-AS1

No disorders were found for SLC25A30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A30-AS1 Gene

Publications for SLC25A30-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for SLC25A30-AS1 Gene

Sources for SLC25A30-AS1 Gene