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Aliases for SLC25A30-AS1 Gene

Subcategory (RNA class) for SLC25A30-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SLC25A30-AS1 Gene

  • SLC25A30 Antisense RNA 1 2 3 5
  • SLC25A30 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXyac-YMR12DG2.1 3

External Ids for SLC25A30-AS1 Gene

Previous GeneCards Identifiers for SLC25A30-AS1 Gene

  • GC13P045993

Summaries for SLC25A30-AS1 Gene

GeneCards Summary for SLC25A30-AS1 Gene

SLC25A30-AS1 (SLC25A30 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC25A30-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC25A30-AS1 Gene

Genomics for SLC25A30-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC25A30-AS1 Gene

Promoters and enhancers for SLC25A30-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J045416 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 662.6 -0.4 -426 2.9 HDGF PKNOX1 CLOCK ZFP64 ARID4B SIN3A YY1 SLC30A9 SP3 SP5 SLC25A30 SLC25A30-AS1 TPT1-AS1 RCN1P2
GH13J045338 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.1 -77.4 -77392 4.6 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 TPT1-AS1 ENSG00000273149 GC13M045343 GC13M045344 TPT1 COG3 SLC25A30 PPIAP25 LOC105370188 ENSG00000225727
GH13J045394 Enhancer 0.8 Ensembl ENCODE 22.5 -22.0 -22043 2.7 ZIC2 PRDM6 SCRT2 MYNN BCL6B ZNF512 GLIS1 ZNF600 SLC25A30-AS1 SLC25A30 PPIAP25 COG3 TPT1-AS1 RCN1P2
GH13J045444 Enhancer 1.1 ENCODE dbSUPER 13.8 +29.5 29507 5.7 FOXA2 MLX ZFP64 ARID4B ZNF48 YY1 SLC30A9 ATF7 RXRA SP5 SLC25A30 SLC25A30-AS1 TPT1-AS1 PPIAP25 COG3
GH13J045499 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.5 +82.3 82324 2.8 FOXA2 JUN CEBPG RARA ZNF316 POLR2A FOS MAFK SOX6 RXRA COG3 PPIAP25 SLC25A30 SLC25A30-AS1 TPT1-AS1 GC13M045553
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A30-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC25A30-AS1 Gene

Genomic Locations for SLC25A30-AS1 Gene
chr13:45,418,162-45,420,371
(GRCh38/hg38)
Size:
2,210 bases
Orientation:
Plus strand
chr13:45,992,297-45,994,506
(GRCh37/hg19)
Size:
2,210 bases
Orientation:
Plus strand

Genomic View for SLC25A30-AS1 Gene

Genes around SLC25A30-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC25A30-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A30-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A30-AS1 Gene

Proteins for SLC25A30-AS1 Gene

Post-translational modifications for SLC25A30-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A30-AS1 Gene

Domains & Families for SLC25A30-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC25A30-AS1 Gene

Function for SLC25A30-AS1 Gene

Phenotypes From GWAS Catalog for SLC25A30-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A30-AS1 Gene

Localization for SLC25A30-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A30-AS1 Gene

Pathways & Interactions for SLC25A30-AS1 Gene

SuperPathways for SLC25A30-AS1 Gene

No Data Available

Interacting Proteins for SLC25A30-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC25A30-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC25A30-AS1 Gene

Drugs & Compounds for SLC25A30-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A30-AS1 Gene

mRNA/cDNA for SLC25A30-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for SLC25A30-AS1 Gene

SLC25A30 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A30-AS1 Gene

No ASD Table

Relevant External Links for SLC25A30-AS1 Gene

GeneLoc Exon Structure for
SLC25A30-AS1
ECgene alternative splicing isoforms for
SLC25A30-AS1

Expression for SLC25A30-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC25A30-AS1 Gene

SOURCE GeneReport for Unigene cluster for SLC25A30-AS1 Gene:

Hs.658038
genes like me logo Genes that share expression patterns with SLC25A30-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A30-AS1 Gene

Orthologs for SLC25A30-AS1 Gene

Evolution for SLC25A30-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A30-AS1 (if available)
TreeFam:
Gene Tree for SLC25A30-AS1 (if available)

No data available for Orthologs for SLC25A30-AS1 Gene

Paralogs for SLC25A30-AS1 Gene

No data available for Paralogs for SLC25A30-AS1 Gene

Variants for SLC25A30-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC25A30-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000123052 -- 45,419,958(+) G/A intron_variant
rs1000496876 -- 45,416,301(+) G/A upstream_transcript_variant
rs1001137376 -- 45,420,698(+) TTTTGTTTTGTTTTGTTTT/TTTTGTTTTGTTTT downstream_transcript_variant
rs1002467150 -- 45,419,286(+) A/G intron_variant
rs1002498424 -- 45,419,546(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC25A30-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv223e201 CNV deletion 23290073
esv3631957 CNV loss 21293372
nsv455875 CNV loss 19166990
nsv510579 CNV deletion 20534489
nsv561578 CNV loss 21841781

Additional Variant Information for SLC25A30-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A30-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC25A30-AS1 Gene

Disorders for SLC25A30-AS1 Gene

Additional Disease Information for SLC25A30-AS1

No disorders were found for SLC25A30-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC25A30-AS1 Gene

Publications for SLC25A30-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for SLC25A30-AS1 Gene

Sources for SLC25A30-AS1 Gene

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