Aliases for SLC25A25-AS1 Gene

Data sources for SLC25A25-AS1 Gene:

RNA type for SLC25A25-AS1 Gene

lncRNA

Aliases for SLC25A25-AS1 Gene

External Ids for SLC25A25-AS1 Gene

Summaries for SLC25A25-AS1 Gene

GeneCards Summary for SLC25A25-AS1 Gene

SLC25A25-AS1 (SLC25A25 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SLC25A25-AS1 include Colorectal Cancer.

Additional gene information for SLC25A25-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC25A25-AS1 Gene

Genomics for SLC25A25-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC25A25-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC25A25-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC25A25-AS1 Gene

Latest Assembly
chr9:128,106,046-128,128,124
(GRCh38/hg38)
Size:
22,079 bases
Orientation:
Minus strand

Previous Assembly
chr9:130,873,450-130,881,013
(GRCh37/hg19 by Entrez Gene)
Size:
7,564 bases
Orientation:
Minus strand

chr9:130,873,450-130,881,013
(GRCh37/hg19 by Ensembl)
Size:
7,564 bases
Orientation:
Minus strand

Genomic View for SLC25A25-AS1 Gene

Genes around SLC25A25-AS1 on UCSC Golden Path with GeneCards custom track
SLC25A25-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SLC25A25-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC25A25-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC25A25-AS1 Gene

Proteins for SLC25A25-AS1 Gene

Post-translational modifications for SLC25A25-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC25A25-AS1 Gene

Domains & Families for SLC25A25-AS1 Gene

Gene Families for SLC25A25-AS1 Gene

genes like me logo Genes that share domains with SLC25A25-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC25A25-AS1 Gene

Function for SLC25A25-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC25A25-AS1 Gene

Localization for SLC25A25-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC25A25-AS1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC25A25-AS1 Gene

Pathways & Interactions for SLC25A25-AS1 Gene

PathCards logo

SuperPathways for SLC25A25-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC25A25-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC25A25-AS1 Gene

Drugs & Compounds for SLC25A25-AS1 Gene

No Compound Related Data Available

Transcripts for SLC25A25-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SLC25A25-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075D94D_9606 lncRNA 3842 3

RefSeq: NR_033374,

LNCipedia: SLC25A25-AS1:6,

NONCODE: NONHSAT134894.2,

URS000076305C_9606 lncRNA 6391 2

Ensembl: ENST00000418747 (view in UCSC) ,

LNCipedia: SLC25A25-AS1:8,

URS00008C1F31_9606 lncRNA 3494 3

LncBook: HSALNT0155650,

LNCipedia: SLC25A25-AS1:14,

NONCODE: NONHSAT134889.2,

URS00008B2FCF_9606 lncRNA 1521 3

LncBook: HSALNT0155661,

LNCipedia: SLC25A25-AS1:2,

NONCODE: NONHSAT134902.2,

URS00008B330A_9606 lncRNA 1460 3

LncBook: HSALNT0155660,

LNCipedia: SLC25A25-AS1:12,

NONCODE: NONHSAT134898.2,

SLC25A25-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SLC25A25-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC25A25-AS1 Gene

No ASD Table

Relevant External Links for SLC25A25-AS1 Gene

GeneLoc Exon Structure for
SLC25A25-AS1

Expression for SLC25A25-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC25A25-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC25A25-AS1

genes like me logo Genes that share expression patterns with SLC25A25-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC25A25-AS1 Gene

Orthologs for SLC25A25-AS1 Gene

Evolution for SLC25A25-AS1 Gene

ENSEMBL:
Gene Tree for SLC25A25-AS1 (if available)
TreeFam:
Gene Tree for SLC25A25-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SLC25A25-AS1

No data available for Orthologs for SLC25A25-AS1 Gene

Paralogs for SLC25A25-AS1 Gene

No data available for Paralogs for SLC25A25-AS1 Gene

Variants for SLC25A25-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SLC25A25-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SLC25A25-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2739058 CNV deletion 23290073
esv2739059 CNV deletion 23290073
nsv471324 CNV gain 18288195
nsv615383 CNV loss 21841781
nsv6723 CNV deletion 18451855
nsv818724 CNV loss 17921354
nsv951769 CNV deletion 24416366

Additional Variant Information for SLC25A25-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC25A25-AS1
Leiden Open Variation Database (LOVD)
SLC25A25-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SLC25A25-AS1 Gene

Disorders for SLC25A25-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SLC25A25-AS1 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SLC25A25-AS1

genes like me logo Genes that share disorders with SLC25A25-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC25A25-AS1 Gene

Publications for SLC25A25-AS1 Gene

  1. Decreased expression of LncRNA SLC25A25-AS1 promotes proliferation, chemoresistance, and EMT in colorectal cancer cells. (PMID: 27553025) Li Y … Huang C (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2016) 2 3 72
  2. LncRNA HRCEG, regulated by HDAC1, inhibits cells proliferation and epithelial-mesenchymal-transition in gastric cancer. (PMID: 31964588) Wu S … Chen R (Cancer genetics 2020) 2 3
  3. [Expression of long non-coding RNA associated with radiotherapy-resistance in colorectal cancer cell lines with different radiosensitivity]. (PMID: 25421768) Xu X … Fu C (Zhonghua wei chang wai ke za zhi = Chinese journal of gastrointestinal surgery 2014) 72

Products for SLC25A25-AS1 Gene

Sources for SLC25A25-AS1 Gene