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Aliases for SLC22A20P Gene

Aliases for SLC22A20P Gene

  • Solute Carrier Family 22 Member 20, Pseudogene 2 3 5
  • Solute Carrier Family 22, Member 20 2 3
  • Solute Carrier Family 22 Member 20 2 3
  • Organic Anion Transporter 6 3
  • SLC22A20 3
  • OAT6 3

External Ids for SLC22A20P Gene

Previous HGNC Symbols for SLC22A20P Gene

  • SLC22A20

Summaries for SLC22A20P Gene

GeneCards Summary for SLC22A20P Gene

SLC22A20P (Solute Carrier Family 22 Member 20, Pseudogene) is a Pseudogene.

Additional gene information for SLC22A20P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC22A20P Gene

Genomics for SLC22A20P Gene

GeneHancer (GH) Regulatory Elements for SLC22A20P Gene

Promoters and enhancers for SLC22A20P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I065215 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +1.7 1700 0.3 SMARCA5 HDAC1 SMARCE1 MEIS2 LEF1 PKNOX1 CEBPB DPF2 ZFHX2 ZNF366 SLC22A20P POLA2 LOC728975 CAPN1 PGAM1P8 CDC42EP2 SPDYC ENSG00000255173 ZNHIT2 HIGD1AP10
GH11I065211 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 -0.9 -871 3 USF1 MAX SIN3A ZIC2 ETS1 ZNF148 SP1 POLR2A GLIS1 IKZF1 SLC22A20P LOC728975 POLA2 CAPN1 PGAM1P8 CDC42EP2 SPDYC ZFPL1 CDCA5 VPS51
GH11I065377 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.2 +168.6 168642 10.3 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 FRMD8 SLC25A45 SF1 PCNX3 POLA2 MUS81 NEAT1 SART1 EIF1AD RELA
GH11I065115 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 4.5 -96.5 -96476 3.5 HDGF FOXA2 PKNOX1 CLOCK SMAD1 ARID4B SIN3A DMAP1 ZNF2 IRF4 ENSG00000255173 ENSG00000278952 ZNHIT2 ZFPL1 MEN1 ENSG00000257086 TRMT112 EIF1AD FAU VPS51
GH11I065119 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 4.5 -92.2 -92177 3.9 HDGF FOXA2 PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 FAU MRPL49 LOC728975 SLC22A20P BANF1 ENSG00000278952 SYVN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC22A20P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC22A20P Gene

Genomic Locations for SLC22A20P Gene
chr11:65,213,840-65,242,757
(GRCh38/hg38)
Size:
28,918 bases
Orientation:
Plus strand
chr11:64,981,311-65,010,228
(GRCh37/hg19)

Genomic View for SLC22A20P Gene

Genes around SLC22A20P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC22A20P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC22A20P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC22A20P Gene

Proteins for SLC22A20P Gene

Post-translational modifications for SLC22A20P Gene

No Post-translational modifications

Other Protein References for SLC22A20P Gene

No data available for DME Specific Peptides for SLC22A20P Gene

Domains & Families for SLC22A20P Gene

Gene Families for SLC22A20P Gene

Suggested Antigen Peptide Sequences for SLC22A20P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SLC22A20P: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SLC22A20P Gene

Function for SLC22A20P Gene

Phenotypes From GWAS Catalog for SLC22A20P Gene

Gene Ontology (GO) - Molecular Function for SLC22A20P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005452 inorganic anion exchanger activity IBA --
GO:0015143 urate transmembrane transporter activity IBA --
GO:0015347 sodium-independent organic anion transmembrane transporter activity IBA --
genes like me logo Genes that share ontologies with SLC22A20P: view

Phenotypes for SLC22A20P Gene

genes like me logo Genes that share phenotypes with SLC22A20P: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC22A20P Gene

Localization for SLC22A20P Gene

Gene Ontology (GO) - Cellular Components for SLC22A20P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
genes like me logo Genes that share ontologies with SLC22A20P: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SLC22A20P Gene

Pathways & Interactions for SLC22A20P Gene

SuperPathways for SLC22A20P Gene

No Data Available

Interacting Proteins for SLC22A20P Gene

Gene Ontology (GO) - Biological Process for SLC22A20P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015698 inorganic anion transport IEA --
GO:0015747 urate transport IBA --
GO:0043252 sodium-independent organic anion transport IBA --
GO:0055085 transmembrane transport IEA --
genes like me logo Genes that share ontologies with SLC22A20P: view

No data available for Pathways by source and SIGNOR curated interactions for SLC22A20P Gene

Drugs & Compounds for SLC22A20P Gene

No Compound Related Data Available

Transcripts for SLC22A20P Gene

mRNA/cDNA for SLC22A20P Gene

(5) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC22A20P Gene

No ASD Table

Relevant External Links for SLC22A20P Gene

GeneLoc Exon Structure for
SLC22A20P
ECgene alternative splicing isoforms for
SLC22A20P

Expression for SLC22A20P Gene

NURSA nuclear receptor signaling pathways regulating expression of SLC22A20P Gene:

SLC22A20P
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC22A20P Gene

Orthologs for SLC22A20P Gene

Evolution for SLC22A20P Gene

ENSEMBL:
Gene Tree for SLC22A20P (if available)
TreeFam:
Gene Tree for SLC22A20P (if available)

No data available for Orthologs for SLC22A20P Gene

Paralogs for SLC22A20P Gene

No data available for Paralogs for SLC22A20P Gene

Variants for SLC22A20P Gene

Sequence variations from dbSNP and Humsavar for SLC22A20P Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000042482 -- 65,241,611(+) T/C genic_downstream_transcript_variant, intron_variant
rs1000048720 -- 65,237,217(+) C/T 3_prime_UTR_variant, genic_downstream_transcript_variant, intron_variant
rs1000150227 -- 65,226,700(+) C/G downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000203362 -- 65,221,256(+) G/A/T intron_variant
rs1000259425 -- 65,240,590(+) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC22A20P Gene

Variant ID Type Subtype PubMed ID
dgv666n106 CNV deletion 24896259
nsv1069594 CNV deletion 25765185
nsv526181 CNV gain 19592680
nsv832190 CNV loss 17160897
nsv951015 CNV deletion 24416366

Additional Variant Information for SLC22A20P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC22A20P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC22A20P Gene

Disorders for SLC22A20P Gene

Additional Disease Information for SLC22A20P

No disorders were found for SLC22A20P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC22A20P Gene

Publications for SLC22A20P Gene

  1. Transport of estrone sulfate by the novel organic anion transporter Oat6 (Slc22a20). (PMID: 16478971) Schnabolk GW … Sweet DH (American journal of physiology. Renal physiology 2006) 2 3 58
  2. Identification of a novel murine organic anion transporter family member, OAT6, expressed in olfactory mucosa. (PMID: 15369770) Monte JC … Nigam SK (Biochemical and biophysical research communications 2004) 2 3 58
  3. TIMMDC1/C3orf1 functions as a membrane-embedded mitochondrial complex I assembly factor through association with the MCIA complex. (PMID: 24344204) Guarani V … Harper JW (Molecular and cellular biology 2014) 3 58
  4. Identification of six putative human transporters with structural similarity to the drug transporter SLC22 family. (PMID: 17714910) Jacobsson JA … Fredriksson R (Genomics 2007) 3 58
  5. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh JH … Kim NS (Mammalian genome : official journal of the International Mammalian Genome Society 2005) 3 58

Products for SLC22A20P Gene

Sources for SLC22A20P Gene

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