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Aliases for SLC16A12-AS1 Gene

Subcategory (RNA class) for SLC16A12-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SLC16A12-AS1 Gene

  • SLC16A12 Antisense RNA 1 2 3 5

External Ids for SLC16A12-AS1 Gene

Summaries for SLC16A12-AS1 Gene

GeneCards Summary for SLC16A12-AS1 Gene

SLC16A12-AS1 (SLC16A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SLC16A12-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC16A12-AS1 Gene

Genomics for SLC16A12-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC16A12-AS1 Gene

Promoters and enhancers for SLC16A12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J089454 Enhancer 0.2 Ensembl 600.7 -0.9 -890 1 SLC16A12-AS1 IFIT5 SLC16A12
GH10J089391 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 9.5 -62.5 -62457 3.7 SP1 CEBPG RELA PRDM1 KAT8 IKZF1 POLR2A RXRA PRDM10 IKZF2 IFIT5 IFIT1 ENSG00000232110 SLC16A12-AS1 LIPA GC10P089413
GH10J089514 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.7 +61.3 61282 6.2 ZSCAN21 MAFK CREB1 POLR2A SP1 ATF7 ZNF629 ZNF316 JUN JUND SLC16A12-AS1 IFIT5 SLC16A12 GC10P089485
GH10J089260 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 9.3 -193.5 -193467 5 CC2D1A ZFX CTCF ZNF687 MLLT1 ZNF680 RAD21 POLR2A RXRA RELA IFIT3 IFIT2 IFIT1 IFIT1B SLC16A12-AS1 IFIT5 ENSG00000232110 GC10P089210 GC10M089235 LIPA
GH10J089474 Enhancer 1 Ensembl ENCODE 11.3 +22.9 22910 9.4 ZNF652 MAFK SP1 RXRA ZIC2 CEBPA ZSCAN4 FOXA2 MNT CEBPB SLC16A12-AS1 SLC16A12 IFIT5 LIPA LIPN GC10P089485
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC16A12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC16A12-AS1 Gene

Genomic Locations for SLC16A12-AS1 Gene
chr10:89,455,991-89,468,151
(GRCh38/hg38)
Size:
12,161 bases
Orientation:
Plus strand
chr10:91,215,821-91,227,897
(GRCh37/hg19)
Size:
12,077 bases
Orientation:
Plus strand

Genomic View for SLC16A12-AS1 Gene

Genes around SLC16A12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC16A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC16A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC16A12-AS1 Gene

Proteins for SLC16A12-AS1 Gene

Post-translational modifications for SLC16A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC16A12-AS1 Gene

Domains & Families for SLC16A12-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SLC16A12-AS1 Gene

Function for SLC16A12-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC16A12-AS1 Gene

Localization for SLC16A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC16A12-AS1 Gene

Pathways & Interactions for SLC16A12-AS1 Gene

PathCards logo

SuperPathways for SLC16A12-AS1 Gene

No Data Available

Interacting Proteins for SLC16A12-AS1 Gene

Gene Ontology (GO) - Biological Process for SLC16A12-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SLC16A12-AS1 Gene

Drugs & Compounds for SLC16A12-AS1 Gene

No Compound Related Data Available

Transcripts for SLC16A12-AS1 Gene

mRNA/cDNA for SLC16A12-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC16A12-AS1 Gene

No ASD Table

Relevant External Links for SLC16A12-AS1 Gene

GeneLoc Exon Structure for
SLC16A12-AS1
ECgene alternative splicing isoforms for
SLC16A12-AS1

Expression for SLC16A12-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC16A12-AS1 Gene

Orthologs for SLC16A12-AS1 Gene

Evolution for SLC16A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC16A12-AS1 (if available)
TreeFam:
Gene Tree for SLC16A12-AS1 (if available)

No data available for Orthologs for SLC16A12-AS1 Gene

Paralogs for SLC16A12-AS1 Gene

No data available for Paralogs for SLC16A12-AS1 Gene

Variants for SLC16A12-AS1 Gene

Sequence variations from dbSNP and Humsavar for SLC16A12-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000064270 -- 89,456,676(+) A/G intron_variant
rs1000233372 -- 89,464,705(+) T/C intron_variant
rs1000408281 -- 89,464,158(+) C/A/G intron_variant
rs1000653956 -- 89,464,481(+) C/A intron_variant
rs1000655265 -- 89,458,341(+) TCT/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC16A12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3624159 CNV loss 21293372

Additional Variant Information for SLC16A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC16A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC16A12-AS1 Gene

Disorders for SLC16A12-AS1 Gene

Additional Disease Information for SLC16A12-AS1

No disorders were found for SLC16A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC16A12-AS1 Gene

Publications for SLC16A12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SLC16A12-AS1 Gene

Sources for SLC16A12-AS1 Gene

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