Aliases for SLC16A12-AS1 Gene

Subcategory (RNA class) for SLC16A12-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SLC16A12-AS1 Gene

  • SLC16A12 Antisense RNA 1 2 3 5
  • SLC16A12-AS1 2 5 165
  • NONHSAG006483.2 91
  • HSALNG0079581 164
  • Lnc-IFIT5-4 165

External Ids for SLC16A12-AS1 Gene

Summaries for SLC16A12-AS1 Gene

GeneCards Summary for SLC16A12-AS1 Gene

SLC16A12-AS1 (SLC16A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC16A12-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC16A12-AS1 Gene

Genomics for SLC16A12-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC16A12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J089431 Enhancer 0.3 Ensembl 600.7 +1.3 1262 1.2 FOXA1 NFIB SLC16A12-AS1 IFIT5 SLC16A12
GH10J089391 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.5 -37.7 -37738 3.6 SP1 PRDM10 REST FOXA1 STAT3 PRDM1 RFX1 RELA IRF2 ZNF740 IFIT5 IFIT1 ENSG00000232110 SLC16A12-AS1 piR-36921-009 LIPA
GH10J089255 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.3 -171.3 -171317 10.8 CTCF TEAD4 FOXA1 LARP7 ZNF143 REST RAD21 SP1 TRIM22 YY1 LIPA IFIT3 IFIT2 IFIT1 IFIT1B ENSG00000240996 SLC16A12-AS1 IFIT5 ENSG00000232110 piR-48369-022
GH10J089474 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 11.2 +48.2 48162 8.6 TEAD4 REST FOXA1 ZIC2 ZSCAN4 SP1 CEBPA MNT CEBPB JUND SLC16A12-AS1 SLC16A12 IFIT5 LIPA LIPN
GH10J089533 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 9.4 +104.1 104126 2.4 POLR2A EZH2 ZBTB20 USF1 ZBTB48 ZBTB26 ETS1 SIN3A ZNF202 CTCF KIF20B SLC16A12-AS1 SLC16A12 IFIT5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC16A12-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC16A12-AS1 Gene

Genomic Locations for SLC16A12-AS1 Gene
chr10:89,430,939-89,468,469
(GRCh38/hg38)
Size:
37,531 bases
Orientation:
Plus strand
chr10:91,215,821-91,227,897
(GRCh37/hg19)
Size:
12,077 bases
Orientation:
Plus strand

Genomic View for SLC16A12-AS1 Gene

Genes around SLC16A12-AS1 on UCSC Golden Path with GeneCards custom track
SLC16A12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SLC16A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC16A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC16A12-AS1 Gene

Proteins for SLC16A12-AS1 Gene

Post-translational modifications for SLC16A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC16A12-AS1 Gene

Domains & Families for SLC16A12-AS1 Gene

Gene Families for SLC16A12-AS1 Gene

genes like me logo Genes that share domains with SLC16A12-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC16A12-AS1 Gene

Function for SLC16A12-AS1 Gene

Phenotypes From GWAS Catalog for SLC16A12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC16A12-AS1 Gene

Localization for SLC16A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC16A12-AS1 Gene

Pathways & Interactions for SLC16A12-AS1 Gene

PathCards logo

SuperPathways for SLC16A12-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC16A12-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC16A12-AS1 Gene

Drugs & Compounds for SLC16A12-AS1 Gene

No Compound Related Data Available

Transcripts for SLC16A12-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SLC16A12-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075C571_9606 lncRNA 562 3

HGNC: 51205,

RefSeq: NR_120614,

LncBook: HSALNT0166082,

URS000003E48E_9606 lncRNA 405 3

Ensembl: ENST00000423474 (view in UCSC) ,

LncBook: HSALNT0166090,

LNCipedia: SLC16A12-AS1:6,

URS000022751D_9606 lncRNA 478 2

Ensembl: ENST00000454270 (view in UCSC) ,

LncBook: HSALNT0166085,

URS00008BE916_9606 lncRNA 1315 3

LncBook: HSALNT0166079,

LNCipedia: lnc-IFIT5-4:1,

NONCODE: NONHSAT015512.2,

URS00008B3CB7_9606 lncRNA 666 2

LncBook: HSALNT0166087,

NONCODE: NONHSAT015513.2,

SLC16A12-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SLC16A12-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC16A12-AS1 Gene

No ASD Table

Relevant External Links for SLC16A12-AS1 Gene

GeneLoc Exon Structure for
SLC16A12-AS1

Expression for SLC16A12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC16A12-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC16A12-AS1

genes like me logo Genes that share expression patterns with SLC16A12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC16A12-AS1 Gene

Orthologs for SLC16A12-AS1 Gene

Evolution for SLC16A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC16A12-AS1 (if available)
TreeFam:
Gene Tree for SLC16A12-AS1 (if available)

No data available for Orthologs for SLC16A12-AS1 Gene

Paralogs for SLC16A12-AS1 Gene

No data available for Paralogs for SLC16A12-AS1 Gene

Variants for SLC16A12-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SLC16A12-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
681342 Benign: not provided 89,462,530(+) A/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs1564577020 Uncertain Significance: not provided 89,462,434(+) A/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for SLC16A12-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC16A12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3624159 CNV loss 21293372

Additional Variant Information for SLC16A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC16A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC16A12-AS1 Gene

Disorders for SLC16A12-AS1 Gene

No disorders were found for SLC16A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC16A12-AS1 Gene

Publications for SLC16A12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for SLC16A12-AS1 Gene

Sources for SLC16A12-AS1 Gene