Aliases for SLC16A12-AS1 Gene

Subcategory (RNA class) for SLC16A12-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SLC16A12-AS1 Gene

  • SLC16A12 Antisense RNA 1 2 3 5
  • SLC16A12-AS1 2 168
  • HSALNG0079581 167
  • NONHSAG006483 92
  • Lnc-IFIT5-4 168

External Ids for SLC16A12-AS1 Gene

Summaries for SLC16A12-AS1 Gene

GeneCards Summary for SLC16A12-AS1 Gene

SLC16A12-AS1 (SLC16A12 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SLC16A12-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC16A12-AS1 Gene

Genomics for SLC16A12-AS1 Gene

GeneHancer (GH) Regulatory Elements for SLC16A12-AS1 Gene

Promoters and enhancers for SLC16A12-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J089431 Enhancer 0.4 Ensembl 500.7 +1.3 1262 1.2 NR3C1 NFIB FOXA1 SLC16A12-AS1 SLC16A12
GH10J089391 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 9.5 -37.7 -37738 3.6 SP1 TRIM28 RFX1 RELA MEF2C ZNF740 POLR2A TEAD1 NFYB MXI1 IFIT5 IFIT1 ENSG00000232110 SLC16A12-AS1 piR-36921-009 LIPA
GH10J089255 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 9.3 -171.3 -171317 10.8 ZBTB40 CTCF TEAD4 ZFX REST RAD21 EP300 TRIM22 ZEB1 SMC3 LIPA IFIT3 IFIT2 IFIT1 IFIT1B SLC16A12-AS1 IFIT5 ENSG00000232110 piR-48369-022 piR-36588-047
GH10J089533 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 9.4 +104.1 104126 2.4 USF1 ZBTB26 EZH2 HDAC2 ZNF263 NANOG TCF12 ETS1 ZBTB48 SIN3A SLC16A12-AS1 SLC16A12
GH10J089474 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 11.2 +48.2 48162 8.6 JUND TEAD4 FOS ZIC2 EP300 TEAD1 FOXA2 NR2F2 CTCF MAFF SLC16A12-AS1 SLC16A12 IFIT5 LIPA LIPN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC16A12-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SLC16A12-AS1 Gene

Genomic Locations for SLC16A12-AS1 Gene
chr10:89,430,939-89,468,469
(GRCh38/hg38)
Size:
37,531 bases
Orientation:
Plus strand
chr10:91,215,821-91,227,897
(GRCh37/hg19)
Size:
12,077 bases
Orientation:
Plus strand

Genomic View for SLC16A12-AS1 Gene

Genes around SLC16A12-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC16A12-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC16A12-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC16A12-AS1 Gene

Proteins for SLC16A12-AS1 Gene

Post-translational modifications for SLC16A12-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC16A12-AS1 Gene

Domains & Families for SLC16A12-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC16A12-AS1 Gene

Function for SLC16A12-AS1 Gene

Phenotypes From GWAS Catalog for SLC16A12-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC16A12-AS1 Gene

Localization for SLC16A12-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC16A12-AS1 Gene

Pathways & Interactions for SLC16A12-AS1 Gene

PathCards logo

SuperPathways for SLC16A12-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SLC16A12-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC16A12-AS1 Gene

Drugs & Compounds for SLC16A12-AS1 Gene

No Compound Related Data Available

Transcripts for SLC16A12-AS1 Gene

mRNA/cDNA for SLC16A12-AS1 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
6 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC16A12-AS1 Gene

No ASD Table

Relevant External Links for SLC16A12-AS1 Gene

GeneLoc Exon Structure for
SLC16A12-AS1

Expression for SLC16A12-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC16A12-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC16A12-AS1

genes like me logo Genes that share expression patterns with SLC16A12-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC16A12-AS1 Gene

Orthologs for SLC16A12-AS1 Gene

Evolution for SLC16A12-AS1 Gene

ENSEMBL:
Gene Tree for SLC16A12-AS1 (if available)
TreeFam:
Gene Tree for SLC16A12-AS1 (if available)

No data available for Orthologs for SLC16A12-AS1 Gene

Paralogs for SLC16A12-AS1 Gene

No data available for Paralogs for SLC16A12-AS1 Gene

Variants for SLC16A12-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SLC16A12-AS1 Gene

SNP ID Clinical significance and condition Chr 10 pos Variation AA Info Type
681342 Benign: not provided 89,462,530(+) A/C MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
rs1564577020 Uncertain Significance: not provided 89,462,434(+) A/C MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for SLC16A12-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC16A12-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3624159 CNV loss 21293372

Additional Variant Information for SLC16A12-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC16A12-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SLC16A12-AS1 Gene

Disorders for SLC16A12-AS1 Gene

Additional Disease Information for SLC16A12-AS1

No disorders were found for SLC16A12-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC16A12-AS1 Gene

Publications for SLC16A12-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

Products for SLC16A12-AS1 Gene

Sources for SLC16A12-AS1 Gene