Aliases for SLC16A1-AS1 Gene

Subcategory (RNA class) for SLC16A1-AS1 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for SLC16A1-AS1 Gene

  • SLC16A1 Antisense RNA 1 2 3 5
  • SLC16A1-AS1 2 5 165
  • ENST00000421157.1 2 3
  • NONHSAG002458.2 91
  • NONHSAG002460.2 91
  • HSALNG0006150 164

External Ids for SLC16A1-AS1 Gene

Previous GeneCards Identifiers for SLC16A1-AS1 Gene

  • GC01P113502

Summaries for SLC16A1-AS1 Gene

GeneCards Summary for SLC16A1-AS1 Gene

SLC16A1-AS1 (SLC16A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SLC16A1-AS1 include Acute Myocardial Infarction and Cervical Cancer.

Additional gene information for SLC16A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SLC16A1-AS1 Gene

Genomics for SLC16A1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SLC16A1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SLC16A1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SLC16A1-AS1 Gene

Genomic Locations for SLC16A1-AS1 Gene
chr1:112,956,415-113,047,056
(GRCh38/hg38)
Size:
90,642 bases
Orientation:
Plus strand
chr1:113,499,020-113,542,118
(GRCh37/hg19)
Size:
43,099 bases
Orientation:
Plus strand

Genomic View for SLC16A1-AS1 Gene

Genes around SLC16A1-AS1 on UCSC Golden Path with GeneCards custom track
SLC16A1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SLC16A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC16A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC16A1-AS1 Gene

Proteins for SLC16A1-AS1 Gene

Post-translational modifications for SLC16A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SLC16A1-AS1 Gene

Domains & Families for SLC16A1-AS1 Gene

Gene Families for SLC16A1-AS1 Gene

genes like me logo Genes that share domains with SLC16A1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SLC16A1-AS1 Gene

Function for SLC16A1-AS1 Gene

Phenotypes From GWAS Catalog for SLC16A1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SLC16A1-AS1 Gene

Localization for SLC16A1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC16A1-AS1 gene
Compartment Confidence
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SLC16A1-AS1 Gene

Pathways & Interactions for SLC16A1-AS1 Gene

PathCards logo

SuperPathways for SLC16A1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC16A1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SLC16A1-AS1 Gene

Drugs & Compounds for SLC16A1-AS1 Gene

No Compound Related Data Available

Transcripts for SLC16A1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SLC16A1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000022F1A4_9606 lncRNA 742 4

Ensembl: ENST00000416193 (view in UCSC) ,

LncBook: HSALNT0012858, HSALNT0012859,

LNCipedia: SLC16A1-AS1:1,

NONCODE: NONHSAT005298.2,

URS000001A84E_9606 lncRNA 436 4

Ensembl: ENST00000451149 (view in UCSC) ,

LncBook: HSALNT0012904,

LNCipedia: SLC16A1-AS1:18,

NONCODE: NONHSAT005311.2,

URS0000321EA1_9606 lncRNA 377 4

Ensembl: ENST00000413231 (view in UCSC) ,

LncBook: HSALNT0012899,

LNCipedia: SLC16A1-AS1:17,

NONCODE: NONHSAT005309.2,

URS00001E39E5_9606 lncRNA 1194 3

Ensembl: ENST00000435800 (view in UCSC) ,

LncBook: HSALNT0012864, HSALNT0012865,

LNCipedia: SLC16A1-AS1:6,

URS00009C602C_9606 lncRNA 1073 3

Ensembl: ENST00000627431 (view in UCSC) ,

LncBook: HSALNT0012880,

LNCipedia: SLC16A1-AS1:12,

SLC16A1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SLC16A1-AS1 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SLC16A1-AS1 Gene

No ASD Table

Relevant External Links for SLC16A1-AS1 Gene

GeneLoc Exon Structure for
SLC16A1-AS1

Expression for SLC16A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SLC16A1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SLC16A1-AS1

genes like me logo Genes that share expression patterns with SLC16A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC16A1-AS1 Gene

Orthologs for SLC16A1-AS1 Gene

Evolution for SLC16A1-AS1 Gene

ENSEMBL:
Gene Tree for SLC16A1-AS1 (if available)
TreeFam:
Gene Tree for SLC16A1-AS1 (if available)

No data available for Orthologs for SLC16A1-AS1 Gene

Paralogs for SLC16A1-AS1 Gene

No data available for Paralogs for SLC16A1-AS1 Gene

Variants for SLC16A1-AS1 Gene

Additional dbSNP identifiers (rs#s) for SLC16A1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SLC16A1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv24626 CNV loss 19812545
esv2670706 CNV deletion 23128226
esv3584026 CNV gain 25503493
esv3894045 CNV gain 25118596
nsv1004102 CNV gain 25217958
nsv480662 CNV novel sequence insertion 20440878
nsv999915 CNV gain 25217958

Additional Variant Information for SLC16A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC16A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SLC16A1-AS1 Gene

Disorders for SLC16A1-AS1 Gene

MalaCards: The human disease database

(3) MalaCards diseases for SLC16A1-AS1 Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
acute myocardial infarction
cervical cancer
  • cervical cancer, somatic
lung cancer
  • adenocarcinoma of lung
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SLC16A1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SLC16A1-AS1 Gene

Publications for SLC16A1-AS1 Gene

  1. lncRNA SLC16A1-AS1 as a novel prognostic biomarker in non-small cell lung cancer. (PMID: 31371390) Liu HY … Liu JL (Journal of investigative medicine : the official publication of the American Federation for Clinical Research 2020) 2 3
  2. Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients. (PMID: 28418905) Zhai H … Yang YN (Oncotarget 2017) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for SLC16A1-AS1 Gene

Sources for SLC16A1-AS1 Gene