Aliases for SKAP1-AS1 Gene

Data sources for SKAP1-AS1 Gene:

RNA type for SKAP1-AS1 Gene

lncRNA

Aliases for SKAP1-AS1 Gene

External Ids for SKAP1-AS1 Gene

Summaries for SKAP1-AS1 Gene

GeneCards Summary for SKAP1-AS1 Gene

SKAP1-AS1 (SKAP1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with SKAP1-AS1 include Pneumonia.

Additional gene information for SKAP1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SKAP1-AS1 Gene

Genomics for SKAP1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SKAP1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J048184 Enhancer 0.2 Ensembl 250.7 -1.0 -1036 0.6 SKAP1-AS1 SNX11 MIR1203 HOXB-AS4 HOXB9 SKAP1 HSALNG0117077 lnc-CBX1-3
GH17J048191 Enhancer 0.9 Ensembl ENCODE 0.4 +7.5 7464 4.8 ZNF600 ZNF580 ZIC2 HES1 ZEB1 TAL1 ZNF843 PRDM6 JUND ZNF2 SNX11 COPZ2 CDK5RAP3 PRR15L MIR1203 CBX1 HSALNG0117077 RNU6-1152P RF00026-428 SKAP1-AS1
GH17J048178 Enhancer 0.9 UCNEbase Ensembl 0.4 -7.1 -7058 1.3 ZNF316 MAFG BCL6B ATF3 FOS POLR2A CBFA2T3 EMSY HCFC1 COPZ2 MIR1203 SNX11 CBX1 NFE2L1 HOXB-AS1 HOXB2 HOXB-AS4 HOXB9 SKAP1-AS1
GH17J048198 Enhancer 0.9 Ensembl ENCODE 0.4 +13.3 13263 1.2 ATF2 FEZF1 ZNF843 PRDM6 ZNF189 INSM2 ZSCAN23 ZNF24 ATF4 JUNB piR-35672-026 SNX11 MIR1203 CBX1 HOXB-AS4 HOXB9 SKAP1 COPZ2 RNU6-1152P RF00026-428
GH17J048175 Enhancer 0.6 Ensembl ENCODE 0.4 -9.7 -9741 2 HDGF MAFK PRDM10 COPZ2 SNX11 RNU6-1152P MIR152 HOXB-AS1 HOXB2 CBX1 NFE2L1 SKAP1 HOXB-AS4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SKAP1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SKAP1-AS1 Gene

Latest Assembly
chr17:48,185,937-48,204,529
(GRCh38/hg38)
Size:
18,593 bases
Orientation:
Plus strand

Previous Assembly
chr17:46,263,300-46,281,891
(GRCh37/hg19 by Ensembl)
Size:
18,592 bases
Orientation:
Plus strand

Genomic View for SKAP1-AS1 Gene

Genes around SKAP1-AS1 on UCSC Golden Path with GeneCards custom track
SKAP1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SKAP1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SKAP1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SKAP1-AS1 Gene

Proteins for SKAP1-AS1 Gene

Post-translational modifications for SKAP1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SKAP1-AS1 Gene

Domains & Families for SKAP1-AS1 Gene

Gene Families for SKAP1-AS1 Gene

genes like me logo Genes that share domains with SKAP1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SKAP1-AS1 Gene

Function for SKAP1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SKAP1-AS1 Gene

Localization for SKAP1-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SKAP1-AS1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SKAP1-AS1 Gene

Pathways & Interactions for SKAP1-AS1 Gene

PathCards logo

SuperPathways for SKAP1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SKAP1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SKAP1-AS1 Gene

Drugs & Compounds for SKAP1-AS1 Gene

No Compound Related Data Available

Transcripts for SKAP1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SKAP1-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000247522_9606 lncRNA 687 4

Ensembl: ENST00000582246 (view in UCSC) ,

LncBook: HSALNT0241871,

LNCipedia: SKAP1-AS1:3,

NONCODE: NONHSAT054390.2,

URS0001BD1693_9606 lncRNA 687 1

LncBook: HSALNT0241871,

SKAP1-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SKAP1-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SKAP1-AS1 Gene

No ASD Table

Relevant External Links for SKAP1-AS1 Gene

GeneLoc Exon Structure for
SKAP1-AS1

Expression for SKAP1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SKAP1-AS1 Gene

Orthologs for SKAP1-AS1 Gene

Evolution for SKAP1-AS1 Gene

ENSEMBL:
Gene Tree for SKAP1-AS1 (if available)
TreeFam:
Gene Tree for SKAP1-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SKAP1-AS1

No data available for Orthologs for SKAP1-AS1 Gene

Paralogs for SKAP1-AS1 Gene

No data available for Paralogs for SKAP1-AS1 Gene

Variants for SKAP1-AS1 Gene

Additional Variant Information for SKAP1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SKAP1-AS1
Leiden Open Variation Database (LOVD)
SKAP1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SKAP1-AS1 Gene

Disorders for SKAP1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SKAP1-AS1 Gene - From: LNC, COP, and GCD

Disorder Aliases PubMed IDs
pneumonia
  • acute pneumonia
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with SKAP1-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for SKAP1-AS1 Gene

Publications for SKAP1-AS1 Gene

  1. Identification of Potential Key Long Non-Coding RNAs and Target Genes Associated with Pneumonia Using Long Non-Coding RNA Sequencing (lncRNA-Seq): A Preliminary Study. (PMID: 27663962) Huang S … Li TS (Medical science monitor : international medical journal of experimental and clinical research 2016) 2 3 72
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

Products for SKAP1-AS1 Gene

Sources for SKAP1-AS1 Gene