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Aliases for SKA2P1 Gene

Aliases for SKA2P1 Gene

  • Spindle And Kinetochore Associated Complex Subunit 2 Pseudogene 1 2 3 5
  • Spindle And Kinetochore Associated Complex Subunit 2-Like 2 3
  • Family With Sequence Similarity 33, Member B 2 3
  • Em:AC006313.1 3
  • FAM33B 3
  • SKA2L 3

External Ids for SKA2P1 Gene

Previous HGNC Symbols for SKA2P1 Gene

  • FAM33B
  • SKA2L

Previous GeneCards Identifiers for SKA2P1 Gene

  • GC09P125526

Summaries for SKA2P1 Gene

GeneCards Summary for SKA2P1 Gene

SKA2P1 (Spindle And Kinetochore Associated Complex Subunit 2 Pseudogene 1) is a Pseudogene.

Additional gene information for SKA2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SKA2P1 Gene

Genomics for SKA2P1 Gene

GeneHancer (GH) Regulatory Elements for SKA2P1 Gene

Promoters and enhancers for SKA2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I123678 Enhancer 1.2 Ensembl ENCODE 13.8 +917.4 917373 2.1 PKNOX1 FOXA2 MLX ZFP64 ARID4B FEZF1 ZNF2 IRF4 ZNF213 ZNF302 SKA2P1 ZBTB26 ENSG00000261094 DENND1A ENSG00000230826 LOC105376266
GH09I123332 Enhancer 0.6 dbSUPER 19.5 +571.1 571143 1 MAFG ZNF316 NFIC HDAC2 KDM1A NFE2 EMSY ZNF112 SKA2P1 MIR600HG MIR600 LOC105376265 CRB2
GH09I122777 Enhancer 0.6 ENCODE 0.4 +16.8 16825 3 SMARCC1 JUN MAX CEBPB EP300 RFX5 JUND SMC3 PRDM10 CHD2 RABGAP1 GC09P122784 SKA2P1
GH09I122766 Enhancer 0.2 FANTOM5 0.4 +5.2 5161 0.4 OR1J4 OR1N2 OR1L8 OR1K1 OR5C1 OR1Q1 OR1J2 OR1L1 OR1B1 OR1L4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SKA2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SKA2P1 Gene

Genomic Locations for SKA2P1 Gene
chr9:122,761,844-122,762,656
(GRCh38/hg38)
Size:
813 bases
Orientation:
Plus strand
chr9:125,524,123-125,524,935
(GRCh37/hg19)

Genomic View for SKA2P1 Gene

Genes around SKA2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SKA2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SKA2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SKA2P1 Gene

Proteins for SKA2P1 Gene

Post-translational modifications for SKA2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SKA2P1 Gene

Domains & Families for SKA2P1 Gene

Suggested Antigen Peptide Sequences for SKA2P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SKA2P1 Gene

Function for SKA2P1 Gene

Phenotypes for SKA2P1 Gene

GenomeRNAi human phenotypes for SKA2P1:
genes like me logo Genes that share phenotypes with SKA2P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SKA2P1 Gene

Localization for SKA2P1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SKA2P1 gene
Compartment Confidence
cytosol 3
nucleus 2
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SKA2P1 Gene

Pathways & Interactions for SKA2P1 Gene

SuperPathways for SKA2P1 Gene

No Data Available

Interacting Proteins for SKA2P1 Gene

Gene Ontology (GO) - Biological Process for SKA2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SKA2P1 Gene

Drugs & Compounds for SKA2P1 Gene

No Compound Related Data Available

Transcripts for SKA2P1 Gene

mRNA/cDNA for SKA2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SKA2P1 Gene

No ASD Table

Relevant External Links for SKA2P1 Gene

GeneLoc Exon Structure for
SKA2P1
ECgene alternative splicing isoforms for
SKA2P1

Expression for SKA2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SKA2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SKA2P1 Gene:

SKA2P1
genes like me logo Genes that share expression patterns with SKA2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SKA2P1 Gene

Orthologs for SKA2P1 Gene

Evolution for SKA2P1 Gene

ENSEMBL:
Gene Tree for SKA2P1 (if available)
TreeFam:
Gene Tree for SKA2P1 (if available)

No data available for Orthologs for SKA2P1 Gene

Paralogs for SKA2P1 Gene

No data available for Paralogs for SKA2P1 Gene

Variants for SKA2P1 Gene

Additional Variant Information for SKA2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SKA2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SKA2P1 Gene

Disorders for SKA2P1 Gene

No disorders were found for SKA2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SKA2P1 Gene

Publications for SKA2P1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 58

Products for SKA2P1 Gene

Sources for SKA2P1 Gene

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