Aliases for SIRPAP1 Gene

Aliases for SIRPAP1 Gene

  • Signal Regulatory Protein Alpha Pseudogene 1 2 3 5
  • SIRPA2P 2 3
  • Protein Tyrosine Phosphatase, Non-Receptor Type Substrate 1-Like 2
  • Signal-Regulatory Protein Alpha Pseudogene 1 2
  • WUGSC:H_DJ0539M06.5 3
  • PTPNS1L 3
  • SIRPAP1 5

External Ids for SIRPAP1 Gene

Previous HGNC Symbols for SIRPAP1 Gene

  • PTPNS1L

Previous GeneCards Identifiers for SIRPAP1 Gene

  • GC22P030940

Summaries for SIRPAP1 Gene

GeneCards Summary for SIRPAP1 Gene

SIRPAP1 (Signal Regulatory Protein Alpha Pseudogene 1) is a Pseudogene.

Additional gene information for SIRPAP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SIRPAP1 Gene

Genomics for SIRPAP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SIRPAP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J030542 Promoter/Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas 600.7 +0.1 91 1.4 RBFOX2 EZH2 POLR2A SAP130 NR2F1 NR2F6 TFAP4 NRF1 RARA TAF1 SIRPAP1 piR-57235-003 OSM DUSP18 TBC1D10A CCDC157 SF3A1 LIF SEC14L6 SEC14L4
GH22J030541 Promoter 0.4 Ensembl 600.7 -0.7 -714 0.2 EZH2 SIRPAP1 SEC14L6 CCDC157 RF00017-3803 SEC14L4
GH22J030543 Enhancer 0.2 FANTOM5 600.7 +1.8 1843 0.4 RF00017-3804 SIRPAP1 piR-57235-003 SEC14L6 SEC14L4
GH22J030537 Enhancer 0.7 Ensembl 0.7 -4.6 -4614 0.8 ZNF740 ZNF766 E2F5 ZBTB11 MEF2D GTF2A2 RELA ZNF644 TFDP1 HDAC8 TUG1 SEC14L6 MORC2 PES1 SIRPAP1 RF00017-3803 SEC14L4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SIRPAP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SIRPAP1 Gene

Genomic Locations for SIRPAP1 Gene
chr22:30,542,215-30,544,935
(GRCh38/hg38)
Size:
2,721 bases
Orientation:
Plus strand
chr22:30,938,242-30,940,921
(GRCh37/hg19)
Size:
2,680 bases
Orientation:
Plus strand

Genomic View for SIRPAP1 Gene

Genes around SIRPAP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIRPAP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIRPAP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIRPAP1 Gene

Proteins for SIRPAP1 Gene

Post-translational modifications for SIRPAP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIRPAP1 Gene

Domains & Families for SIRPAP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SIRPAP1 Gene

Function for SIRPAP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIRPAP1 Gene

Localization for SIRPAP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SIRPAP1 Gene

Pathways & Interactions for SIRPAP1 Gene

PathCards logo

SuperPathways for SIRPAP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SIRPAP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SIRPAP1 Gene

Drugs & Compounds for SIRPAP1 Gene

No Compound Related Data Available

Transcripts for SIRPAP1 Gene

mRNA/cDNA for SIRPAP1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SIRPAP1 Gene

No ASD Table

Relevant External Links for SIRPAP1 Gene

GeneLoc Exon Structure for
SIRPAP1

Expression for SIRPAP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SIRPAP1 Gene

mRNA differential expression in normal tissues according to GTEx for SIRPAP1 Gene

This gene is overexpressed in Testis (x9.5).
genes like me logo Genes that share expression patterns with SIRPAP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIRPAP1 Gene

Orthologs for SIRPAP1 Gene

Evolution for SIRPAP1 Gene

ENSEMBL:
Gene Tree for SIRPAP1 (if available)
TreeFam:
Gene Tree for SIRPAP1 (if available)

No data available for Orthologs for SIRPAP1 Gene

Paralogs for SIRPAP1 Gene

No data available for Paralogs for SIRPAP1 Gene

Variants for SIRPAP1 Gene

Additional Variant Information for SIRPAP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIRPAP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SIRPAP1 Gene

Disorders for SIRPAP1 Gene

No disorders were found for SIRPAP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SIRPAP1 Gene

Publications for SIRPAP1 Gene

  1. Signal regulatory proteins in the immune system. (PMID: 16339510) van Beek EM … van den Berg TK (Journal of immunology (Baltimore, Md. : 1950) 2005) 2 3
  2. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I … O'Brien KP (Nature 1999) 2 3
  3. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3

Products for SIRPAP1 Gene

Sources for SIRPAP1 Gene