Aliases for SIGLEC17P Gene

Aliases for SIGLEC17P Gene

  • Sialic Acid Binding Ig Like Lectin 17, Pseudogene 2 3 5
  • Sialic Acid Binding Ig-Like Lectin, Pseudogene 3 2 3
  • Sialic Acid Binding Ig-Like Lectin 17, Pseudogene 2
  • Silec Pseudogene-2 3
  • SIGLEC17P 5
  • SIGLECP2 3
  • SIGLECP3 3
  • HSPC078 3

External Ids for SIGLEC17P Gene

Previous HGNC Symbols for SIGLEC17P Gene

  • SIGLECP3

Previous GeneCards Identifiers for SIGLEC17P Gene

  • GC19P051671

Summaries for SIGLEC17P Gene

GeneCards Summary for SIGLEC17P Gene

SIGLEC17P (Sialic Acid Binding Ig Like Lectin 17, Pseudogene) is a Pseudogene.

Additional gene information for SIGLEC17P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SIGLEC17P Gene

Genomics for SIGLEC17P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SIGLEC17P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051167 Promoter/Enhancer 1 Ensembl ENCODE 250.7 +0.5 473 1.2 NR2C1 SPI1 MYC RAD51 MAX IKZF1 NR2F1 NR2F6 ESRRA L3MBTL2 SIGLEC17P LOC101928517 SIGLEC7 CD33
GH19J051168 Enhancer 0.8 FANTOM5 250.7 +1.7 1709 0.2 MNT HES1 BHLHE40 ZEB1 ZIC2 FOSL1 ZNF24 RAD51 CTCF ZNF318 SIGLEC17P SIGLEC6 SIGLEC8 LOC101928517 SIGLEC7 CD33
GH19J051687 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 34.1 +523.2 523163 6.9 ZSCAN16 ZBTB10 FEZF1 NR2C1 MNT IKZF1 SMAD5 MBD2 ZBTB7B ZEB1 SPACA6 ZNF137P ZNF808 ZNF841 ZNF577 ZNF616 ZNF766 ZNF175 ENSG00000268970 ZNF836
GH19J052138 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 20.6 +972.1 972116 3.7 TBP SP1 ZBTB10 MXD4 CEBPA NR2C1 MNT IKZF1 SMAD5 ETS1 ZNF616 ZNF137P ZNF160 ZNF350 ZNF808 ENSG00000268970 ZNF600 ZNF816 ZNF836 ZNF577
GH19J050650 Enhancer 1.1 Ensembl ENCODE 24.1 -517.9 -517911 2 ZSCAN16 ZBTB10 SIX5 IKZF1 ETS1 MBD2 ZNF217 ZEB1 THAP11 ARNT C19orf81 POLD1 IRF3 NUP62 PRMT1 ENSG00000268047 SIGLEC17P BCL2L12 SYT3 PTOV1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SIGLEC17P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SIGLEC17P Gene

Latest Assembly
chr19:51,167,328-51,173,524
(GRCh38/hg38)
Size:
6,197 bases
Orientation:
Plus strand

Previous Assembly
chr19:51,670,585-51,676,780
(GRCh37/hg19 by Entrez Gene)
Size:
6,196 bases
Orientation:
Plus strand

chr19:51,670,585-51,676,780
(GRCh37/hg19 by Ensembl)
Size:
6,196 bases
Orientation:
Plus strand

Genomic View for SIGLEC17P Gene

Genes around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIGLEC17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIGLEC17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIGLEC17P Gene

Proteins for SIGLEC17P Gene

Post-translational modifications for SIGLEC17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIGLEC17P Gene

Domains & Families for SIGLEC17P Gene

Gene Families for SIGLEC17P Gene

genes like me logo Genes that share domains with SIGLEC17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SIGLEC17P Gene

Function for SIGLEC17P Gene

Phenotypes From GWAS Catalog for SIGLEC17P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIGLEC17P Gene

Localization for SIGLEC17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SIGLEC17P Gene

Pathways & Interactions for SIGLEC17P Gene

PathCards logo

SuperPathways for SIGLEC17P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SIGLEC17P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SIGLEC17P Gene

Drugs & Compounds for SIGLEC17P Gene

No Compound Related Data Available

Transcripts for SIGLEC17P Gene

mRNA/cDNA for SIGLEC17P Gene

7 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC17P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b
SP1: -
SP2: - -
SP3:

Relevant External Links for SIGLEC17P Gene

GeneLoc Exon Structure for
SIGLEC17P

Expression for SIGLEC17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SIGLEC17P Gene

mRNA differential expression in normal tissues according to GTEx for SIGLEC17P Gene

This gene is overexpressed in Whole Blood (x7.5) and Spleen (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SIGLEC17P

SOURCE GeneReport for Unigene cluster for SIGLEC17P Gene:

Hs.132045
genes like me logo Genes that share expression patterns with SIGLEC17P: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIGLEC17P Gene

Orthologs for SIGLEC17P Gene

Evolution for SIGLEC17P Gene

ENSEMBL:
Gene Tree for SIGLEC17P (if available)
TreeFam:
Gene Tree for SIGLEC17P (if available)

No data available for Orthologs for SIGLEC17P Gene

Paralogs for SIGLEC17P Gene

No data available for Paralogs for SIGLEC17P Gene

Variants for SIGLEC17P Gene

Structural Variations from Database of Genomic Variants (DGV) for SIGLEC17P Gene

Variant ID Type Subtype PubMed ID
esv3574598 CNV gain 25503493
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SIGLEC17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIGLEC17P

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for SIGLEC17P Gene

Disorders for SIGLEC17P Gene

Additional Disease Information for SIGLEC17P

No disorders were found for SIGLEC17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIGLEC17P Gene

Publications for SIGLEC17P Gene

  1. Specific inactivation of two immunomodulatory SIGLEC genes during human evolution. (PMID: 22665810) Wang X … Varki A (Proceedings of the National Academy of Sciences of the United States of America 2012) 3
  2. Genomic organization of the siglec gene locus on chromosome 19q13.4 and cloning of two new siglec pseudogenes. (PMID: 11943481) Yousef GM … Diamandis EP (Gene 2002) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
  4. A second uniquely human mutation affecting sialic acid biology. (PMID: 11546777) Angata T … Varki A (The Journal of biological chemistry 2001) 3

Products for SIGLEC17P Gene

Sources for SIGLEC17P Gene