Aliases for SIGLEC17P Gene

Aliases for SIGLEC17P Gene

  • Sialic Acid Binding Ig Like Lectin 17, Pseudogene 2 3 5
  • Sialic Acid Binding Ig-Like Lectin, Pseudogene 3 2 3
  • Sialic Acid Binding Ig-Like Lectin 17, Pseudogene 2
  • Silec Pseudogene-2 3
  • SIGLECP2 3
  • SIGLECP3 3
  • HSPC078 3

External Ids for SIGLEC17P Gene

Previous HGNC Symbols for SIGLEC17P Gene

  • SIGLECP3

Previous GeneCards Identifiers for SIGLEC17P Gene

  • GC19P051671

Summaries for SIGLEC17P Gene

GeneCards Summary for SIGLEC17P Gene

SIGLEC17P (Sialic Acid Binding Ig Like Lectin 17, Pseudogene) is a Pseudogene.

Additional gene information for SIGLEC17P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SIGLEC17P Gene

Genomics for SIGLEC17P Gene

GeneHancer (GH) Regulatory Elements for SIGLEC17P Gene

Promoters and enhancers for SIGLEC17P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051167 Promoter/Enhancer 1 Ensembl ENCODE 500.7 +0.1 73 0.4 CTBP1 USF2 MAX SPI1 NR2C1 NR2F1 IKZF1 NR2F6 TBX21 CREM SIGLEC17P LOC101928517
GH19J051168 Enhancer 0.8 FANTOM5 500.7 +1.7 1709 0.2 CTCF ZIC2 HES1 TOE1 ZEB1 BCL11A KLF8 FOSL1 BCOR ZNF335 SIGLEC17P SIGLEC6 SIGLEC8 LOC101928517
GH19J051170 Promoter 0.4 Ensembl 500.7 +0.7 673 0.4 ZSCAN29 SIGLEC17P LOC101928517
GH19J051687 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 34.1 +523.2 523163 6.9 EP300 CTCF TCF12 NCOR1 BCLAF1 RBAK GTF2E2 TEAD4 PHB2 ZFX SPACA6 ZNF808 ZNF137P ZNF766 ZNF175 ZNF577 ZNF841 ZNF616 ENSG00000269825 ENSG00000268970
GH19J051358 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 19.7 +196.5 196474 11.2 EP300 FOXK2 ZBTB40 CTCF NRF1 TCF12 POLR2G SP1 NCOR1 GTF2E2 ETFB ENSG00000268520 CLDND2 ZNF841 ZNF616 ZNF175 ZNF766 POLD1 ZNF577 ZNF836
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SIGLEC17P Gene

Genomic Locations for SIGLEC17P Gene
chr19:51,167,328-51,173,524
(GRCh38/hg38)
Size:
6,197 bases
Orientation:
Plus strand
chr19:51,670,585-51,676,780
(GRCh37/hg19)
Size:
6,196 bases
Orientation:
Plus strand

Genomic View for SIGLEC17P Gene

Genes around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIGLEC17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIGLEC17P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIGLEC17P Gene

Proteins for SIGLEC17P Gene

Post-translational modifications for SIGLEC17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIGLEC17P Gene

Domains & Families for SIGLEC17P Gene

Gene Families for SIGLEC17P Gene

genes like me logo Genes that share domains with SIGLEC17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SIGLEC17P Gene

Function for SIGLEC17P Gene

Phenotypes From GWAS Catalog for SIGLEC17P Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIGLEC17P Gene

Localization for SIGLEC17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SIGLEC17P Gene

Pathways & Interactions for SIGLEC17P Gene

PathCards logo

SuperPathways for SIGLEC17P Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SIGLEC17P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SIGLEC17P Gene

Drugs & Compounds for SIGLEC17P Gene

No Compound Related Data Available

Transcripts for SIGLEC17P Gene

mRNA/cDNA for SIGLEC17P Gene

7 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC17P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b
SP1: -
SP2: - -
SP3:

Relevant External Links for SIGLEC17P Gene

GeneLoc Exon Structure for
SIGLEC17P

Expression for SIGLEC17P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SIGLEC17P Gene

mRNA differential expression in normal tissues according to GTEx for SIGLEC17P Gene

This gene is overexpressed in Whole Blood (x7.5) and Spleen (x4.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SIGLEC17P

SOURCE GeneReport for Unigene cluster for SIGLEC17P Gene:

Hs.132045
genes like me logo Genes that share expression patterns with SIGLEC17P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIGLEC17P Gene

Orthologs for SIGLEC17P Gene

Evolution for SIGLEC17P Gene

ENSEMBL:
Gene Tree for SIGLEC17P (if available)
TreeFam:
Gene Tree for SIGLEC17P (if available)

No data available for Orthologs for SIGLEC17P Gene

Paralogs for SIGLEC17P Gene

No data available for Paralogs for SIGLEC17P Gene

Variants for SIGLEC17P Gene

Structural Variations from Database of Genomic Variants (DGV) for SIGLEC17P Gene

Variant ID Type Subtype PubMed ID
esv3574598 CNV gain 25503493
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SIGLEC17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIGLEC17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SIGLEC17P Gene

Disorders for SIGLEC17P Gene

Additional Disease Information for SIGLEC17P

No disorders were found for SIGLEC17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIGLEC17P Gene

Publications for SIGLEC17P Gene

  1. Specific inactivation of two immunomodulatory SIGLEC genes during human evolution. (PMID: 22665810) Wang X … Varki A (Proceedings of the National Academy of Sciences of the United States of America 2012) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  3. Genomic organization of the siglec gene locus on chromosome 19q13.4 and cloning of two new siglec pseudogenes. (PMID: 11943481) Yousef GM … Diamandis EP (Gene 2002) 3 54
  4. A second uniquely human mutation affecting sialic acid biology. (PMID: 11546777) Angata T … Varki A (The Journal of biological chemistry 2001) 3 54

Products for SIGLEC17P Gene

Sources for SIGLEC17P Gene