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SIGLEC17P Gene(Pseudogene)

Sialic Acid Binding Ig Like Lectin 17, Pseudogene

GCID:
GC19P051167
GIFtS:
17
Genes Participants
UDN Logo

Aliases for SIGLEC17P Gene

Aliases for SIGLEC17P Gene

  • Sialic Acid Binding Ig Like Lectin 17, Pseudogene 2 3 5
  • Sialic Acid Binding Ig-Like Lectin, Pseudogene 3 2 3
  • Sialic Acid Binding Ig-Like Lectin 17, Pseudogene 2
  • Silec Pseudogene-2 3
  • SIGLECP2 3
  • SIGLECP3 3
  • HSPC078 3

External Ids for SIGLEC17P Gene

Previous HGNC Symbols for SIGLEC17P Gene

  • SIGLECP3

Previous GeneCards Identifiers for SIGLEC17P Gene

  • GC19P051671

Summaries for SIGLEC17P Gene

GeneCards Summary for SIGLEC17P Gene

SIGLEC17P (Sialic Acid Binding Ig Like Lectin 17, Pseudogene) is a Pseudogene.

Additional gene information for SIGLEC17P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SIGLEC17P Gene

Genomics for SIGLEC17P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SIGLEC17P Gene

Promoters and enhancers for SIGLEC17P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I051168 Enhancer 1.3 FANTOM5 Ensembl ENCODE 550.8 +2.0 1987 0.7 ATF1 ZNF2 RAD21 RFX5 ZEB1 ZNF335 GLIS2 ZNF143 SIRT6 FOS SIGLEC17P SIGLEC6 SIGLEC8 LOC101928517
GH19I051167 Enhancer 0.9 Ensembl ENCODE 550.8 +0.3 345 1.1 HDAC1 L3MBTL2 NR2F1 MAX DPF2 CTBP1 POLR2A IKZF1 NR2C1 ZSCAN29 SIGLEC17P LOC101928517
GH19I051687 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 34.1 +523.2 523163 6.9 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 ZBTB7B E2F8 ZNF207 ZNF143 ZNF137P ZNF808 ZNF841 ZNF616 ZNF766 ZNF577 ENSG00000268970 ZNF836 ENSG00000269825 ZNF175
GH19I052137 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 20.6 +972.3 972304 3.3 PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF616 ZNF137P ZNF160 ZNF808 ENSG00000268970 ZNF600 ZNF350 ZNF816 ZNF836 ZNF577
GH19I050802 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 20.8 -363.0 -363045 4.2 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT ARID4B NEUROD1 SIN3A FEZF1 DMAP1 C19orf48 GC19M050829 GC19M050838 SNORD88C POLD1 PTOV1-AS2 NUP62 PNKP ZNF175 CTU1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SIGLEC17P Gene

Genomic Locations for SIGLEC17P Gene
chr19:51,167,328-51,173,524
(GRCh38/hg38)
Size:
6,197 bases
Orientation:
Plus strand
chr19:51,670,585-51,676,780
(GRCh37/hg19)

Genomic View for SIGLEC17P Gene

Genes around SIGLEC17P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SIGLEC17P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIGLEC17P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SIGLEC17P Gene

Proteins for SIGLEC17P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SIGLEC17P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIGLEC17P Gene

Domains & Families for SIGLEC17P Gene

Gene Families for SIGLEC17P Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SIGLEC17P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SIGLEC17P Gene

Function for SIGLEC17P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SIGLEC17P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIGLEC17P Gene

Localization for SIGLEC17P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SIGLEC17P Gene

Pathways & Interactions for SIGLEC17P Gene

SuperPathways for SIGLEC17P Gene

PathCards logo More details on SuperPathways for SIGLEC17P
No Data Available

Interacting Proteins for SIGLEC17P Gene

Gene Ontology (GO) - Biological Process for SIGLEC17P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SIGLEC17P Gene

Drugs & Compounds for SIGLEC17P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SIGLEC17P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SIGLEC17P Gene

(7) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SIGLEC17P Gene

Sialic acid binding Ig-like lectin 17, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC17P Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b
SP1: -
SP2: - -
SP3:

Relevant External Links for SIGLEC17P Gene

GeneLoc Exon Structure for
SIGLEC17P
ECgene alternative splicing isoforms for
SIGLEC17P

Expression for SIGLEC17P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SIGLEC17P Gene

mRNA expression in normal human tissues for SIGLEC17P Gene
mRNA expression by BioGPS for SIGLEC17P GenemRNA expression by GTEx for SIGLEC17P Gene

mRNA differential expression in normal tissues according to GTEx for SIGLEC17P Gene

This gene is overexpressed in Whole Blood (x7.5) and Spleen (x4.7).

NURSA nuclear receptor signaling pathways regulating expression of SIGLEC17P Gene:

SIGLEC17P

SOURCE GeneReport for Unigene cluster for SIGLEC17P Gene:

Hs.132045
genes like me logo Genes that share expression patterns with SIGLEC17P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIGLEC17P Gene

Orthologs for SIGLEC17P Gene

Evolution for SIGLEC17P Gene

ENSEMBL:
Gene Tree for SIGLEC17P (if available)
TreeFam:
Gene Tree for SIGLEC17P (if available)

No data available for Orthologs for SIGLEC17P Gene

Paralogs for SIGLEC17P Gene

No data available for Paralogs for SIGLEC17P Gene

Variants for SIGLEC17P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SIGLEC17P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000405601 -- 51,173,973(+) G/C downstream_transcript_variant
rs1000956297 -- 51,173,142(+) T/C non_coding_transcript_variant
rs1001378841 -- 51,168,937(+) A/G intron_variant
rs1002791899 -- 51,170,249(+) C/A intron_variant
rs1003194990 -- 51,166,080(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SIGLEC17P Gene

Variant ID Type Subtype PubMed ID
esv3574598 CNV gain 25503493
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SIGLEC17P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIGLEC17P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SIGLEC17P Gene

Disorders for SIGLEC17P Gene

Additional Disease Information for SIGLEC17P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SIGLEC17P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIGLEC17P Gene

Publications for SIGLEC17P Gene

  1. Specific inactivation of two immunomodulatory SIGLEC genes during human evolution. (PMID: 22665810) Wang X … Varki A (Proceedings of the National Academy of Sciences of the United States of America 2012) 3 58
  2. Genomic organization of the siglec gene locus on chromosome 19q13.4 and cloning of two new siglec pseudogenes. (PMID: 11943481) Yousef GM … Diamandis EP (Gene 2002) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. A second uniquely human mutation affecting sialic acid biology. (PMID: 11546777) Angata T … Varki A (The Journal of biological chemistry 2001) 3 58

Products for SIGLEC17P Gene

Sources for SIGLEC17P Gene

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