Aliases for SIGLEC10-AS1 Gene

Data sources for SIGLEC10-AS1 Gene:

Subcategory (RNA class) for SIGLEC10-AS1 Gene

lncRNA

Aliases for SIGLEC10-AS1 Gene

External Ids for SIGLEC10-AS1 Gene

Summaries for SIGLEC10-AS1 Gene

GeneCards Summary for SIGLEC10-AS1 Gene

SIGLEC10-AS1 (SIGLEC10 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SIGLEC10-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SIGLEC10-AS1 Gene

Genomics for SIGLEC10-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SIGLEC10-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051416 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 250.7 +1.8 1776 2.2 BCL11A VEZF1 IRF4 EBF1 SMARCA5 FOSL1 CBFB TAF1 SPI1 POLR2A SIGLEC10 SIGLEC10-AS1 C19orf84
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SIGLEC10-AS1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for SIGLEC10-AS1

Genomic Locations for SIGLEC10-AS1 Gene

Latest Assembly
chr19:51,415,724-51,418,197
(GRCh38/hg38)
Size:
2,474 bases
Orientation:
Plus strand

Previous Assembly
chr19:51,918,978-51,921,451
(GRCh37/hg19 by Entrez Gene)
Size:
2,474 bases
Orientation:
Plus strand

chr19:51,918,978-51,920,679
(GRCh37/hg19 by Ensembl)
Size:
1,702 bases
Orientation:
Plus strand

Genomic View for SIGLEC10-AS1 Gene

Genes around SIGLEC10-AS1 on UCSC Golden Path with GeneCards custom track
SIGLEC10-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SIGLEC10-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SIGLEC10-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SIGLEC10-AS1 Gene

Proteins for SIGLEC10-AS1 Gene

Post-translational modifications for SIGLEC10-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SIGLEC10-AS1 Gene

Domains & Families for SIGLEC10-AS1 Gene

Gene Families for SIGLEC10-AS1 Gene

genes like me logo Genes that share domains with SIGLEC10-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SIGLEC10-AS1 Gene

Function for SIGLEC10-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SIGLEC10-AS1 Gene

Localization for SIGLEC10-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SIGLEC10-AS1 Gene

Pathways & Interactions for SIGLEC10-AS1 Gene

PathCards logo

SuperPathways for SIGLEC10-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SIGLEC10-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SIGLEC10-AS1 Gene

Drugs & Compounds for SIGLEC10-AS1 Gene

No Compound Related Data Available

Transcripts for SIGLEC10-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SIGLEC10-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E57BA_9606 lncRNA 627 2

Ensembl: ENST00000526996 (view in UCSC) ,

LncBook: HSALNT0261731,

URS00019812FB_9606 lncRNA 1776 1

RefSeq: NR_164125,

URS0000EEACAF_9606 lncRNA 1682 1

RefSeq: NR_164124,

URS000039EEDD_9606 lncRNA 729 1

Ensembl: ENST00000532688 (view in UCSC) ,

URS0001BCAD87_9606 lncRNA 1231 1

LncBook: HSALNT0261725,

SIGLEC10-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SIGLEC10-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SIGLEC10-AS1 Gene

No ASD Table

Relevant External Links for SIGLEC10-AS1 Gene

GeneLoc Exon Structure for
SIGLEC10-AS1

Expression for SIGLEC10-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SIGLEC10-AS1

SOURCE GeneReport for Unigene cluster for SIGLEC10-AS1 Gene:

Hs.724300
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SIGLEC10-AS1 Gene

Orthologs for SIGLEC10-AS1 Gene

Evolution for SIGLEC10-AS1 Gene

ENSEMBL:
Gene Tree for SIGLEC10-AS1 (if available)
TreeFam:
Gene Tree for SIGLEC10-AS1 (if available)

No data available for Orthologs for SIGLEC10-AS1 Gene

Paralogs for SIGLEC10-AS1 Gene

No data available for Paralogs for SIGLEC10-AS1 Gene

Variants for SIGLEC10-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SIGLEC10-AS1 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
769046 Benign: not provided 51,417,359(+) C/.
NM_033130.5(SIGLEC10):c.144= (p.Gln48=)
NON_CODING_TRANSCRIPT_VARIANT,NO_SEQUENCE_ALTERATION
rs142651280 Benign: not provided 51,416,811(+) G/A
NM_033130.5(SIGLEC10):c.561C>T (p.Ser187=)
SYNONYMOUS_VARIANT,INTRON
rs202177835 Benign: not provided 51,416,956(+) A/G
NM_033130.5(SIGLEC10):c.422-6T>C
INTRON
rs61741677 Benign: not provided 51,416,744(+) T/C
NM_033130.5(SIGLEC10):c.628A>G (p.Asn210Asp)
MISSENSE

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SIGLEC10-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SIGLEC10-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1140251 OTHER inversion 24896259

Additional Variant Information for SIGLEC10-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SIGLEC10-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SIGLEC10-AS1 Gene

Disorders for SIGLEC10-AS1 Gene

Additional Disease Information for SIGLEC10-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for SIGLEC10-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SIGLEC10-AS1 Gene

Publications for SIGLEC10-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

No data available for Mastermind for SIGLEC10-AS1 Gene

Products for SIGLEC10-AS1 Gene

Sources for SIGLEC10-AS1 Gene