Aliases for SHLD2P3 Gene

Aliases for SHLD2P3 Gene

  • Shieldin Complex Subunit 2 Pseudogene 3 2 3 5
  • Family With Sequence Similarity 35, Member B2 (Pseudogene) 2 3
  • Family With Sequence Similarity 35 Member D, Pseudogene 2 3
  • Family With Sequence Similarity 35, Member D, Pseudogene 2
  • Family With Sequence Similarity 35, Member A Pseudogene 3
  • Family With Sequence Similarity 35, Member B2 2
  • FAM35B2 3
  • FAM35DP 3
  • SHLD2P3 5

External Ids for SHLD2P3 Gene

Previous HGNC Symbols for SHLD2P3 Gene

  • FAM35B2
  • FAM35DP

Summaries for SHLD2P3 Gene

GeneCards Summary for SHLD2P3 Gene

SHLD2P3 (Shieldin Complex Subunit 2 Pseudogene 3) is a Pseudogene.

Additional gene information for SHLD2P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SHLD2P3 Gene

Genomics for SHLD2P3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SHLD2P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J047705 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 0.4 +16.5 16501 2 PRDM10 PATZ1 REST ZNF561 NONO MGA KLF9 EGR1 CTBP1 ZBTB10 LOC107984289 RHEBP2 lnc-NPY4R2-569 SHLD2P3 LOC102724488 AGAP9 ANXA8
GH10J047681 Enhancer 0.4 Ensembl 0.4 -8.2 -8205 1.4 ZNF316 FOXA2 EMSY MAFK HSALNG0077728 SHLD2P3 LOC102724488 AGAP9 ANXA8
GH10J047701 Enhancer 0.3 Ensembl 0.4 +11.9 11939 1.1 CTCF LOC107984289 lnc-AGAP9-3-002 SHLD2P3 LOC102724488 AGAP9 ANXA8
GH10J047699 Enhancer 0.3 Ensembl 0.4 +10.3 10301 1.2 NFE2 LOC107984289 lnc-AGAP9-3-002 SHLD2P3 LOC102724488 AGAP9 ANXA8
GH10J047695 Enhancer 0.2 Ensembl 0.4 +6.8 6801 3 lnc-AGAP9-3-002 NONHSAG005836.2 LOC107984289 SHLD2P3 LOC102724488 AGAP9 ANXA8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHLD2P3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SHLD2P3 Gene

Genomic Locations for SHLD2P3 Gene
chr10:47,689,700-47,731,218
(GRCh38/hg38)
Size:
41,519 bases
Orientation:
Plus strand
chr10:47,379,720-47,421,238
(GRCh37/hg19)
Size:
41,519 bases
Orientation:
Plus strand

Genomic View for SHLD2P3 Gene

Genes around SHLD2P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHLD2P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHLD2P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHLD2P3 Gene

Proteins for SHLD2P3 Gene

Post-translational modifications for SHLD2P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHLD2P3 Gene

Domains & Families for SHLD2P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SHLD2P3 Gene

Function for SHLD2P3 Gene

genes like me logo Genes that share phenotypes with SHLD2P3: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHLD2P3 Gene

Localization for SHLD2P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHLD2P3 Gene

Pathways & Interactions for SHLD2P3 Gene

PathCards logo

SuperPathways for SHLD2P3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SHLD2P3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SHLD2P3 Gene

Drugs & Compounds for SHLD2P3 Gene

No Compound Related Data Available

Transcripts for SHLD2P3 Gene

mRNA/cDNA for SHLD2P3 Gene

1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHLD2P3 Gene

No ASD Table

Relevant External Links for SHLD2P3 Gene

GeneLoc Exon Structure for
SHLD2P3

Expression for SHLD2P3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SHLD2P3

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHLD2P3 Gene

Orthologs for SHLD2P3 Gene

Evolution for SHLD2P3 Gene

ENSEMBL:
Gene Tree for SHLD2P3 (if available)
TreeFam:
Gene Tree for SHLD2P3 (if available)

No data available for Orthologs for SHLD2P3 Gene

Paralogs for SHLD2P3 Gene

No data available for Paralogs for SHLD2P3 Gene

Variants for SHLD2P3 Gene

Structural Variations from Database of Genomic Variants (DGV) for SHLD2P3 Gene

Variant ID Type Subtype PubMed ID
dgv119e214 CNV gain 21293372
dgv444n106 CNV duplication 24896259
esv3333637 CNV duplication 20981092
esv3446255 CNV duplication 20981092
esv3623122 CNV loss 21293372
nsv1115392 CNV duplication 24896259
nsv1151350 CNV duplication 26484159
nsv469543 CNV gain+loss 16826518
nsv550729 CNV gain 21841781
nsv821424 CNV duplication 20802225
nsv947940 CNV duplication 23825009
nsv947941 CNV duplication 23825009
nsv947972 CNV duplication 23825009
nsv951579 CNV duplication 24416366

Additional Variant Information for SHLD2P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHLD2P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for SHLD2P3 Gene

Disorders for SHLD2P3 Gene

Additional Disease Information for SHLD2P3

No disorders were found for SHLD2P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHLD2P3 Gene

Publications for SHLD2P3 Gene

No publications were found for SHLD2P3 Gene.

Products for SHLD2P3 Gene

Sources for SHLD2P3 Gene