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Aliases for SHLD2P1 Gene

Aliases for SHLD2P1 Gene

  • Shieldin Complex Subunit 2 Pseudogene 1 2 3 5
  • Family With Sequence Similarity 35, Member E, Pseudogene 2 3
  • Family With Sequence Similarity 35 Member B, Pseudogene 2 3
  • Family With Sequence Similarity 35, Member B, Pseudogene 2
  • Family With Sequence Similarity 35, Member A Pseudogene 3
  • Family With Sequence Similarity 35, Member B 2
  • BA38L15.1 3
  • FAM35BP 3
  • FAM35EP 3
  • FAM35B 3

External Ids for SHLD2P1 Gene

Previous HGNC Symbols for SHLD2P1 Gene

  • FAM35B
  • FAM35EP
  • FAM35BP

Summaries for SHLD2P1 Gene

GeneCards Summary for SHLD2P1 Gene

SHLD2P1 (Shieldin Complex Subunit 2 Pseudogene 1) is a Pseudogene.

Additional gene information for SHLD2P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHLD2P1 Gene

Genomics for SHLD2P1 Gene

GeneHancer (GH) Regulatory Elements for SHLD2P1 Gene

Promoters and enhancers for SHLD2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J046652 Enhancer 0.2 Ensembl 600.7 +0.5 524 0.2 SHLD2P1 RN7SL248P
GH10J046651 Enhancer 0.2 Ensembl 600.7 +0.9 924 0.2 SHLD2P1 RN7SL248P
GH10J046653 Enhancer 0.2 Ensembl 600.7 -2.0 -1976 0.4 SHLD2P1 LOC101927584
GH10J046091 Promoter/Enhancer 1.8 EPDnew FANTOM5 ENCODE dbSUPER 10 +557.4 557408 7 ELF3 CEBPG CDC5L TFE3 MLLT1 IKZF1 GLIS2 IKZF2 ZIC2 GATAD2A MSMB NCOA4 AGAP7P BMS1P1 SHLD2P1 TIMM23 GC10M046105 PIR51454 RPL23AP61
GH10J046522 Enhancer 1.3 Ensembl ENCODE 10.1 +127.1 127054 4.4 ZNF473 MTA3 ZKSCAN8 MLLT1 ZNF121 GTF2F1 CSDE1 ZSCAN21 CDC5L BACH1 PARGP1 AGAP4 BMS1P1 AGAP9 WASHC2C ENSG00000229227 AGAP10P FAM21FP ZFAND4 SHLD2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHLD2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SHLD2P1 Gene

Genomic Locations for SHLD2P1 Gene
chr10:46,610,472-46,652,025
(GRCh38/hg38)
Size:
41,554 bases
Orientation:
Minus strand
chr10:46,897,592-46,939,145
(GRCh37/hg19)
Size:
41,554 bases
Orientation:
Plus strand

Genomic View for SHLD2P1 Gene

Genes around SHLD2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHLD2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHLD2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHLD2P1 Gene

Proteins for SHLD2P1 Gene

Post-translational modifications for SHLD2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHLD2P1 Gene

Domains & Families for SHLD2P1 Gene

Suggested Antigen Peptide Sequences for SHLD2P1 Gene

GenScript: Design optimal peptide antigens:
  • Protein FAM35B (FA35B_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SHLD2P1 Gene

Function for SHLD2P1 Gene

genes like me logo Genes that share phenotypes with SHLD2P1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHLD2P1 Gene

Localization for SHLD2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHLD2P1 Gene

Pathways & Interactions for SHLD2P1 Gene

PathCards logo

SuperPathways for SHLD2P1 Gene

No Data Available

Interacting Proteins for SHLD2P1 Gene

Gene Ontology (GO) - Biological Process for SHLD2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHLD2P1 Gene

Drugs & Compounds for SHLD2P1 Gene

No Compound Related Data Available

Transcripts for SHLD2P1 Gene

mRNA/cDNA for SHLD2P1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for SHLD2P1 Gene

Family with sequence similarity 35, member A pseudogene:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHLD2P1 Gene

No ASD Table

Relevant External Links for SHLD2P1 Gene

GeneLoc Exon Structure for
SHLD2P1
ECgene alternative splicing isoforms for
SHLD2P1

Expression for SHLD2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SHLD2P1 Gene:

SHLD2P1

SOURCE GeneReport for Unigene cluster for SHLD2P1 Gene:

Hs.594331
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHLD2P1 Gene

Orthologs for SHLD2P1 Gene

Evolution for SHLD2P1 Gene

ENSEMBL:
Gene Tree for SHLD2P1 (if available)
TreeFam:
Gene Tree for SHLD2P1 (if available)

No data available for Orthologs for SHLD2P1 Gene

Paralogs for SHLD2P1 Gene

No data available for Paralogs for SHLD2P1 Gene

Variants for SHLD2P1 Gene

Sequence variations from dbSNP and Humsavar for SHLD2P1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs10540793 -- 46,620,666(-) TTTTTTTTTTTTTTTTT/TTTTTTTTT/TTTTTTTTTTT/TTTTTTTTTTTTT/TTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTT/TTTTTTTTTTTTTTTTTTTTTTTTT intron_variant
rs1059769 -- 46,634,655(-) A/C/G intron_variant
rs10797302 -- 46,648,298(-) G/A intron_variant
rs10797303 -- 46,648,141(-) A/G intron_variant
rs10909636 -- 46,619,298(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SHLD2P1 Gene

Variant ID Type Subtype PubMed ID
dgv440n106 CNV duplication 24896259
dgv734n100 CNV gain 25217958
dgv737n100 CNV loss 25217958
dgv738n100 CNV loss 25217958
dgv739n100 CNV gain 25217958
dgv740n100 CNV gain+loss 25217958
dgv742n100 CNV loss 25217958
dgv743n100 CNV gain 25217958
dgv746n100 CNV gain 25217958
dgv747n100 CNV gain+loss 25217958
dgv748n100 CNV gain 25217958
dgv749n100 CNV gain+loss 25217958
dgv750n100 CNV loss 25217958
dgv751n100 CNV gain 25217958
dgv752n100 CNV loss 25217958
dgv753n100 CNV gain 25217958
dgv8n68 CNV gain 17160897
esv2736152 CNV deletion 23290073
esv3584617 CNV loss 24956385
nsv1037583 CNV loss 25217958
nsv1041409 CNV loss 25217958
nsv1042820 CNV gain+loss 25217958
nsv1047710 CNV gain+loss 25217958
nsv1050225 CNV gain+loss 25217958
nsv1069042 CNV deletion 25765185
nsv1069043 CNV deletion 25765185
nsv1118167 CNV deletion 24896259
nsv1118474 CNV duplication 24896259
nsv1118475 CNV duplication 24896259
nsv1150494 CNV duplication 26484159
nsv550721 CNV loss 21841781
nsv550722 CNV gain 21841781
nsv947927 CNV duplication 23825009
nsv947928 CNV duplication 23825009
nsv951572 CNV deletion 24416366
nsv951573 CNV duplication 24416366
nsv951574 CNV duplication 24416366
nsv951575 CNV deletion 24416366

Additional Variant Information for SHLD2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHLD2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SHLD2P1 Gene

Disorders for SHLD2P1 Gene

Additional Disease Information for SHLD2P1

No disorders were found for SHLD2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHLD2P1 Gene

Publications for SHLD2P1 Gene

  1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 58

Products for SHLD2P1 Gene

Sources for SHLD2P1 Gene

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