Aliases for SHANK2-AS3 Gene

Subcategory (RNA class) for SHANK2-AS3 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for SHANK2-AS3 Gene

  • SHANK2 Antisense RNA 3 2 3 5
  • SHANK2 Antisense RNA 3 (Non-Protein Coding) 2 3
  • SHANK2-AS3 2 170
  • C11orf76 3 4
  • Putative Uncharacterized Protein SHANK2-AS3 4
  • Chromosome 11 Open Reading Frame 76 2
  • HSALNG0141626 169
  • NONHSAG008933 94

External Ids for SHANK2-AS3 Gene

Previous HGNC Symbols for SHANK2-AS3 Gene

  • C11orf76

Previous GeneCards Identifiers for SHANK2-AS3 Gene

  • GC11P070709

Summaries for SHANK2-AS3 Gene

GeneCards Summary for SHANK2-AS3 Gene

SHANK2-AS3 (SHANK2 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SHANK2-AS3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SHANK2-AS3 Gene

Genomics for SHANK2-AS3 Gene

GeneHancer (GH) Regulatory Elements for SHANK2-AS3 Gene

Promoters and enhancers for SHANK2-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070861 Enhancer 0.3 Ensembl 750.6 -1.3 -1288 1 PKNOX1 CTCF SHANK2-AS3 HSALNG0085445 SHANK2
GH11J070862 Enhancer 0.3 ENCODE 750.6 -0.5 -489 0 PKNOX1 ZIC2 SHANK2-AS3 HSALNG0085445 SHANK2
GH11J070825 Promoter/Enhancer 0.7 Ensembl ENCODE 11.5 -36.1 -36122 1.1 HLF USF1 EZH2 SHANK2-AS3 HSALNG0085445 SHANK2
GH11J070885 Enhancer 0.6 Ensembl ENCODE CraniofacialAtlas 12.5 +24.2 24159 3.3 REST ENSG00000286708 piR-54492 SHANK2-AS3 SHANK2
GH11J070835 Enhancer 0.3 Ensembl 12.1 -27.8 -27788 0.8 SP1 SHANK2-AS3 HSALNG0085445 SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHANK2-AS3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SHANK2-AS3 Gene

Genomic Locations for SHANK2-AS3 Gene
chr11:70,862,789-70,865,115
(GRCh38/hg38)
Size:
2,327 bases
Orientation:
Plus strand
chr11:70,708,895-70,711,220
(GRCh37/hg19)
Size:
2,326 bases
Orientation:
Plus strand

Genomic View for SHANK2-AS3 Gene

Genes around SHANK2-AS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHANK2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHANK2-AS3 Gene

Proteins for SHANK2-AS3 Gene

  • Protein details for SHANK2-AS3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BTD1-SHAS3_HUMAN
    Recommended name:
    Putative uncharacterized protein SHANK2-AS3
    Protein Accession:
    Q9BTD1

    Protein attributes for SHANK2-AS3 Gene

    Size:
    123 amino acids
    Molecular mass:
    13317 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH04224.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SHANK2-AS3 Gene

Post-translational modifications for SHANK2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS3 Gene

Domains & Families for SHANK2-AS3 Gene

Protein Domains for SHANK2-AS3 Gene

ProtoNet:
genes like me logo Genes that share domains with SHANK2-AS3: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SHANK2-AS3 Gene

Function for SHANK2-AS3 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SHANK2-AS3

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS3 Gene

Localization for SHANK2-AS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS3 Gene

Pathways & Interactions for SHANK2-AS3 Gene

PathCards logo

SuperPathways for SHANK2-AS3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SHANK2-AS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHANK2-AS3 Gene

Drugs & Compounds for SHANK2-AS3 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS3 Gene

mRNA/cDNA for SHANK2-AS3 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) NONCODE transcripts :
(3) RNACentral transcripts :
(1) LncBook transcripts :
(1) LNCipedia transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SHANK2-AS3

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS3 Gene

No ASD Table

Relevant External Links for SHANK2-AS3 Gene

GeneLoc Exon Structure for
SHANK2-AS3
ECgene alternative splicing isoforms for
SHANK2-AS3

Expression for SHANK2-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SHANK2-AS3 Gene

SOURCE GeneReport for Unigene cluster for SHANK2-AS3 Gene:

Hs.326766
genes like me logo Genes that share expression patterns with SHANK2-AS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS3 Gene

Orthologs for SHANK2-AS3 Gene

Evolution for SHANK2-AS3 Gene

ENSEMBL:
Gene Tree for SHANK2-AS3 (if available)
TreeFam:
Gene Tree for SHANK2-AS3 (if available)

No data available for Orthologs for SHANK2-AS3 Gene

Paralogs for SHANK2-AS3 Gene

No data available for Paralogs for SHANK2-AS3 Gene

Variants for SHANK2-AS3 Gene

Sequence variations from dbSNP and Humsavar for SHANK2-AS3 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1001807510 -- 70,864,645(+) G/A non_coding_transcript_variant
rs1002093167 -- 70,864,936(+) G/A non_coding_transcript_variant
rs1002291393 -- 70,860,893(+) G/A upstream_transcript_variant
rs1002684601 -- 70,863,708(+) C/T intron_variant
rs1004877098 -- 70,864,955(+) G/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SHANK2-AS3 Gene

Variant ID Type Subtype PubMed ID
esv993927 CNV deletion 20482838
nsv381 CNV insertion 18451855
nsv555399 CNV loss 21841781

Additional Variant Information for SHANK2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SHANK2-AS3 Gene

Disorders for SHANK2-AS3 Gene

Additional Disease Information for SHANK2-AS3

No disorders were found for SHANK2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHANK2-AS3 Gene

Publications for SHANK2-AS3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 56

Products for SHANK2-AS3 Gene

Sources for SHANK2-AS3 Gene