Aliases for SHANK2-AS3 Gene

RNA type for SHANK2-AS3 Gene


Aliases for SHANK2-AS3 Gene

External Ids for SHANK2-AS3 Gene

Previous HGNC Symbols for SHANK2-AS3 Gene

  • C11orf76

Previous GeneCards Identifiers for SHANK2-AS3 Gene

  • GC11P070709

Summaries for SHANK2-AS3 Gene

GeneCards Summary for SHANK2-AS3 Gene

SHANK2-AS3 (SHANK2 Antisense RNA 3) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SHANK2-AS3 Gene

Genomics for SHANK2-AS3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SHANK2-AS3 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070861 Enhancer 0.6 Ensembl ENCODE 250.7 -1.1 -1088 1.4 ZIC2 MEIS2 PKNOX1 SHANK2-AS3 HSALNG0085446 SHANK2 CTTN
GH11J070825 Promoter/Enhancer 0.8 Ensembl ENCODE 11.5 -36.1 -36148 1 EZH2 RBM22 HLF USF1 SHANK2-AS3 HSALNG0085446 CTTN SHANK2
GH11J070834 Enhancer 0.7 Ensembl ENCODE 12.1 -28.3 -28288 1.8 MAFF YY1 ZNF316 MAFK MAFG SP1 ZNF143 EZH2 EMSY SHANK2-AS3 HSALNG0085446 SHANK2 CTTN
GH11J070885 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 12.5 +24.0 23959 2.9 REST RBM22 ENSG00000286708 HSALNG0085447 piR-54492 SHANK2-AS3 SHANK2 CTTN
GH11J070827 Enhancer 0.2 ENCODE 11.5 -35.5 -35458 0.1 SHANK2-AS3 HSALNG0085446 CTTN SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHANK2-AS3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SHANK2-AS3 Gene

Latest Assembly
2,327 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
2,326 bases
Plus strand

(GRCh37/hg19 by Ensembl)
2,326 bases
Plus strand

Genomic View for SHANK2-AS3 Gene

Genes around SHANK2-AS3 on UCSC Golden Path with GeneCards custom track
SHANK2-AS3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SHANK2-AS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHANK2-AS3 Gene

Proteins for SHANK2-AS3 Gene

  • Protein details for SHANK2-AS3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein SHANK2-AS3
    Protein Accession:

    Protein attributes for SHANK2-AS3 Gene

    123 amino acids
    Molecular mass:
    13317 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH04224.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};

neXtProt entry for SHANK2-AS3 Gene

Post-translational modifications for SHANK2-AS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS3 Gene

Domains & Families for SHANK2-AS3 Gene

Gene Families for SHANK2-AS3 Gene

genes like me logo Genes that share domains with SHANK2-AS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SHANK2-AS3 Gene

Function for SHANK2-AS3 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS3 Gene

Localization for SHANK2-AS3 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SHANK2-AS3 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS3 Gene

Pathways & Interactions for SHANK2-AS3 Gene

PathCards logo

SuperPathways for SHANK2-AS3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SHANK2-AS3 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SHANK2-AS3 Gene

Drugs & Compounds for SHANK2-AS3 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SHANK2-AS3 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003E6DED_9606 lncRNA 1683 3

Ensembl: ENST00000307548 (view in UCSC) ,

LNCipedia: SHANK2-AS3:1,


URS000075D7DD_9606 lncRNA 1683 1

RefSeq: NR_073536,

URS0000EA2ADA_9606 lncRNA 1686 1

LncBook: HSALNT0289515,

URS0001BD99C0_9606 lncRNA 1683 1

LncBook: HSALNT0289515,

SHANK2-AS3 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SHANK2-AS3 Gene

1 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SHANK2-AS3

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS3 Gene

No ASD Table

Relevant External Links for SHANK2-AS3 Gene

GeneLoc Exon Structure for

Expression for SHANK2-AS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SHANK2-AS3 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SHANK2-AS3

SOURCE GeneReport for Unigene cluster for SHANK2-AS3 Gene:

genes like me logo Genes that share expression patterns with SHANK2-AS3: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS3 Gene

Orthologs for SHANK2-AS3 Gene

Evolution for SHANK2-AS3 Gene

Gene Tree for SHANK2-AS3 (if available)
Gene Tree for SHANK2-AS3 (if available)
Alliance of Genome Resources:
Additional Orthologs for SHANK2-AS3

No data available for Orthologs for SHANK2-AS3 Gene

Paralogs for SHANK2-AS3 Gene

No data available for Paralogs for SHANK2-AS3 Gene

Variants for SHANK2-AS3 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SHANK2-AS3 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SHANK2-AS3 Gene

Variant ID Type Subtype PubMed ID
esv993927 CNV deletion 20482838
nsv381 CNV insertion 18451855
nsv555399 CNV loss 21841781

Additional Variant Information for SHANK2-AS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SHANK2-AS3 Gene

Disorders for SHANK2-AS3 Gene

Additional Disease Information for SHANK2-AS3

No disorders were found for SHANK2-AS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHANK2-AS3 Gene

Publications for SHANK2-AS3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3

Products for SHANK2-AS3 Gene

Sources for SHANK2-AS3 Gene