Aliases for SHANK2-AS2 Gene

Subcategory (RNA class) for SHANK2-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for SHANK2-AS2 Gene

  • SHANK2 Antisense RNA 2 2 3 5
  • SHANK2 Antisense RNA 2 (Non-Protein Coding) 2 3
  • SHANK2-AS2 2 168
  • HSALNG0085443 167
  • NONHSAG008932 92

External Ids for SHANK2-AS2 Gene

Previous GeneCards Identifiers for SHANK2-AS2 Gene

  • GC00U933197
  • GC11P070493

Summaries for SHANK2-AS2 Gene

GeneCards Summary for SHANK2-AS2 Gene

SHANK2-AS2 (SHANK2 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SHANK2-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SHANK2-AS2 Gene

Genomics for SHANK2-AS2 Gene

GeneHancer (GH) Regulatory Elements for SHANK2-AS2 Gene

Promoters and enhancers for SHANK2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070641 Enhancer 0.7 Ensembl ENCODE CraniofacialAtlas 500.7 +1.7 1705 1.6 MXI1 MAX CHD2 SHANK2-AS2 AB372742-001 SHANK2
GH11J070521 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -115.7 -115695 6.4 ZIC2 KLF4 RFX1 CTCF POLR2A ETS1 BATF KLF9 MYC BHLHE40 SHANK2 SHANK2-AS2 ENSG00000246889 ENSG00000254682 DHCR7 piR-43164-008 piR-45311
GH11J070742 Enhancer 1 Ensembl ENCODE 9.8 +102.6 102605 1.8 NRF1 ZIC2 GABPA HES1 MYC CTBP1 HDAC2 NCOR1 NFIC TARDBP HSALNG0085445 SHANK2-AS2 RF00017-971 SHANK2
GH11J070469 Enhancer 1 Ensembl ENCODE 10.1 -169.9 -169923 1.3 EP300 RELA MEF2C HES1 TOE1 RUNX1 NCOR1 TCF12 NFIC MAX SHANK2-AS2 ENSG00000227726 NONHSAG008926.2 SHANK2
GH11J070567 Enhancer 0.9 ENCODE CraniofacialAtlas 11.1 -71.8 -71773 1.8 ZNF217 CLOCK ZBTB11 KLF4 CTCF CTBP1 SIN3A MYC GABPA REST hsa-miR-1273e-012 SHANK2-AS2 lnc-FGF3-6 SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHANK2-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SHANK2-AS2 Gene

Genomic Locations for SHANK2-AS2 Gene
chr11:70,640,296-70,648,785
(GRCh38/hg38)
Size:
8,490 bases
Orientation:
Plus strand
chr11:70,492,270-70,493,667
(GRCh37/hg19)
Size:
1,398 bases
Orientation:
Plus strand

Genomic View for SHANK2-AS2 Gene

Genes around SHANK2-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHANK2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SHANK2-AS2 Gene

Proteins for SHANK2-AS2 Gene

Post-translational modifications for SHANK2-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS2 Gene

Domains & Families for SHANK2-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SHANK2-AS2 Gene

Function for SHANK2-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS2 Gene

Localization for SHANK2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS2 Gene

Pathways & Interactions for SHANK2-AS2 Gene

PathCards logo

SuperPathways for SHANK2-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SHANK2-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SHANK2-AS2 Gene

Drugs & Compounds for SHANK2-AS2 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS2 Gene

mRNA/cDNA for SHANK2-AS2 Gene

3 RNACentral transcripts :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS2 Gene

No ASD Table

Relevant External Links for SHANK2-AS2 Gene

GeneLoc Exon Structure for
SHANK2-AS2

Expression for SHANK2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SHANK2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for SHANK2-AS2 Gene

This gene is overexpressed in Testis (x28.2) and Pituitary (x4.8).
genes like me logo Genes that share expression patterns with SHANK2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS2 Gene

Orthologs for SHANK2-AS2 Gene

Evolution for SHANK2-AS2 Gene

ENSEMBL:
Gene Tree for SHANK2-AS2 (if available)
TreeFam:
Gene Tree for SHANK2-AS2 (if available)

No data available for Orthologs for SHANK2-AS2 Gene

Paralogs for SHANK2-AS2 Gene

No data available for Paralogs for SHANK2-AS2 Gene

Variants for SHANK2-AS2 Gene

Additional Variant Information for SHANK2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SHANK2-AS2 Gene

Disorders for SHANK2-AS2 Gene

No disorders were found for SHANK2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SHANK2-AS2 Gene

Publications for SHANK2-AS2 Gene

No publications were found for SHANK2-AS2 Gene.

No data available for Mastermind for SHANK2-AS2 Gene

Products for SHANK2-AS2 Gene

Sources for SHANK2-AS2 Gene