Aliases for SHANK2-AS2 Gene

Data sources for SHANK2-AS2 Gene:

RNA type for SHANK2-AS2 Gene

lncRNA

Aliases for SHANK2-AS2 Gene

External Ids for SHANK2-AS2 Gene

Previous GeneCards Identifiers for SHANK2-AS2 Gene

  • GC00U933197
  • GC11P070493

Summaries for SHANK2-AS2 Gene

GeneCards Summary for SHANK2-AS2 Gene

SHANK2-AS2 (SHANK2 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SHANK2-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SHANK2-AS2 Gene

Genomics for SHANK2-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SHANK2-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070638 Enhancer 0.9 Ensembl ENCODE 250.7 -1.9 -1895 1.6 ZMYM3 FOXA2 SMAD4 SAP130 ETV4 RARA GABPB1 FOSL2 BCL6 KDM1A SHANK2-AS2 SHANK2-AS1 CTTN SHANK2
GH11J070521 Enhancer 1.3 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.6 -115.7 -115696 6 ZIC2 ETS1 BHLHE40 MAX CTCF GLIS1 MNT RFX1 RAD21 ZBTB20 SHANK2 SHANK2-AS2 ENSG00000246889 DHCR7 piR-43164-008 piR-45311 CTTN
GH11J070742 Enhancer 1 Ensembl ENCODE 9.8 +102.6 102605 1.8 MYC NCOR1 IKZF1 NFIC ZIC2 HES1 MNT TARDBP TAL1 STAT5A HSALNG0085445 SHANK2-AS2 RF00017-880 CTTN SHANK2
GH11J070699 Enhancer 0.9 Ensembl ENCODE 10.9 +59.8 59773 0.7 SIX5 CEBPA REST ETS1 ZNF217 RAD51 THAP11 HCFC1 SAP130 GABPB1 SHANK2-AS2 ENSG00000207196 AB372742-001 CTTN SHANK2
GH11J070469 Enhancer 0.9 Ensembl ENCODE 10.1 -169.9 -169923 1.3 NCOR1 NFIC HES1 BHLHE40 TAL1 RUNX1 EBF1 SMARCA5 STAT5A FOXM1 SHANK2-AS2 HSALNG0085436 piR-54496-003 NONHSAG008926.2 CTTN SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHANK2-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SHANK2-AS2 Gene

Latest Assembly
chr11:70,640,296-70,648,785
(GRCh38/hg38)
Size:
8,490 bases
Orientation:
Plus strand

Previous Assembly
chr11:70,492,270-70,493,667
(GRCh37/hg19 by Ensembl)
Size:
1,398 bases
Orientation:
Plus strand

Genomic View for SHANK2-AS2 Gene

Genes around SHANK2-AS2 on UCSC Golden Path with GeneCards custom track
SHANK2-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SHANK2-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SHANK2-AS2 Gene

Proteins for SHANK2-AS2 Gene

Post-translational modifications for SHANK2-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS2 Gene

Domains & Families for SHANK2-AS2 Gene

Gene Families for SHANK2-AS2 Gene

genes like me logo Genes that share domains with SHANK2-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SHANK2-AS2 Gene

Function for SHANK2-AS2 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS2 Gene

Localization for SHANK2-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS2 Gene

Pathways & Interactions for SHANK2-AS2 Gene

PathCards logo

SuperPathways for SHANK2-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SHANK2-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SHANK2-AS2 Gene

Drugs & Compounds for SHANK2-AS2 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SHANK2-AS2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000046F768_9606 lncRNA 358 4

Ensembl: ENST00000429268 (view in UCSC) ,

LncBook: HSALNT0177800,

LNCipedia: SHANK2-AS2:1,

NONCODE: NONHSAT022669.2,

URS00009B195D_9606 lncRNA 356 2

LncBook: HSALNT0177801,

NONCODE: NONHSAT159363.1,

URS0000E94A32_9606 lncRNA 7626 1

LncBook: HSALNT0177798,

URS0001BCAE81_9606 lncRNA 7626 1

LncBook: HSALNT0177798,

URS0001BF4E69_9606 lncRNA 1776 1

LncBook: HSALNT0177799,

SHANK2-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SHANK2-AS2 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS2 Gene

No ASD Table

Relevant External Links for SHANK2-AS2 Gene

GeneLoc Exon Structure for
SHANK2-AS2

Expression for SHANK2-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SHANK2-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for SHANK2-AS2 Gene

This gene is overexpressed in Testis (x28.2) and Pituitary (x4.8).
genes like me logo Genes that share expression patterns with SHANK2-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS2 Gene

Orthologs for SHANK2-AS2 Gene

Evolution for SHANK2-AS2 Gene

ENSEMBL:
Gene Tree for SHANK2-AS2 (if available)
TreeFam:
Gene Tree for SHANK2-AS2 (if available)
Alliance of Genome Resources:
Additional Orthologs for SHANK2-AS2

No data available for Orthologs for SHANK2-AS2 Gene

Paralogs for SHANK2-AS2 Gene

No data available for Paralogs for SHANK2-AS2 Gene

Variants for SHANK2-AS2 Gene

Additional Variant Information for SHANK2-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS2
Leiden Open Variation Database (LOVD)
SHANK2-AS2

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SHANK2-AS2 Gene

Disorders for SHANK2-AS2 Gene

No disorders were found for SHANK2-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SHANK2-AS2 Gene

Publications for SHANK2-AS2 Gene

No publications were found for SHANK2-AS2 Gene.

No data available for Mastermind for SHANK2-AS2 Gene

Products for SHANK2-AS2 Gene

Sources for SHANK2-AS2 Gene