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Aliases for SHANK2-AS1 Gene

Subcategory (RNA class) for SHANK2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SHANK2-AS1 Gene

  • SHANK2 Antisense RNA 1 2 3 5
  • SHANK2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SHANK2-AS1 Gene

Previous GeneCards Identifiers for SHANK2-AS1 Gene

  • GC00U933960
  • GC11P070478

Summaries for SHANK2-AS1 Gene

GeneCards Summary for SHANK2-AS1 Gene

SHANK2-AS1 (SHANK2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SHANK2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SHANK2-AS1 Gene

Genomics for SHANK2-AS1 Gene

GeneHancer (GH) Regulatory Elements for SHANK2-AS1 Gene

Promoters and enhancers for SHANK2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I070628 Enhancer 0.4 ENCODE 550.8 -2.0 -1984 0.9 KLF1 ZNF341 PRDM10 SHANK2-AS1 SHANK2 GC11P070622
GH11I070625 Enhancer 0.4 FANTOM5 0.8 -5.0 -4990 0.6 MXI1 RFX1 SHANK2-AS2 SHANK2 SHANK2-AS1 GC11P070622
GH11I070638 Enhancer 0.7 ENCODE 0.4 +7.3 7337 0.2 ELF3 SOX13 TFAP4 FOXA2 SAP130 MLX RAD21 RARA NR2F6 SOX5 SHANK2-AS1 SHANK2-AS2 SHANK2
GH11I070641 Enhancer 0.4 ENCODE 0.4 +10.5 10497 0.2 CHD2 SPI1 SHANK2-AS2 SHANK2-AS1 SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SHANK2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SHANK2-AS1 Gene

Genomic Locations for SHANK2-AS1 Gene
chr11:70,631,094-70,635,490
(GRCh38/hg38)
Size:
4,397 bases
Orientation:
Plus strand
chr11:70,477,199-70,481,595
(GRCh37/hg19)

Genomic View for SHANK2-AS1 Gene

Genes around SHANK2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SHANK2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHANK2-AS1 Gene

Proteins for SHANK2-AS1 Gene

Post-translational modifications for SHANK2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS1 Gene

Domains & Families for SHANK2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SHANK2-AS1 Gene

Function for SHANK2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS1 Gene

Localization for SHANK2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS1 Gene

Pathways & Interactions for SHANK2-AS1 Gene

SuperPathways for SHANK2-AS1 Gene

No Data Available

Interacting Proteins for SHANK2-AS1 Gene

Gene Ontology (GO) - Biological Process for SHANK2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SHANK2-AS1 Gene

Drugs & Compounds for SHANK2-AS1 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS1 Gene

mRNA/cDNA for SHANK2-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SHANK2-AS1 Gene

SHANK2 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS1 Gene

No ASD Table

Relevant External Links for SHANK2-AS1 Gene

GeneLoc Exon Structure for
SHANK2-AS1
ECgene alternative splicing isoforms for
SHANK2-AS1

Expression for SHANK2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SHANK2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SHANK2-AS1 Gene

This gene is overexpressed in Testis (x21.4), Brain - Cortex (x4.8), Brain - Frontal Cortex (BA9) (x4.3), and Pituitary (x4.2).

SOURCE GeneReport for Unigene cluster for SHANK2-AS1 Gene:

Hs.656610
genes like me logo Genes that share expression patterns with SHANK2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS1 Gene

Orthologs for SHANK2-AS1 Gene

Evolution for SHANK2-AS1 Gene

ENSEMBL:
Gene Tree for SHANK2-AS1 (if available)
TreeFam:
Gene Tree for SHANK2-AS1 (if available)

No data available for Orthologs for SHANK2-AS1 Gene

Paralogs for SHANK2-AS1 Gene

No data available for Paralogs for SHANK2-AS1 Gene

Variants for SHANK2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SHANK2-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000541566 -- 70,630,923(+) G/A upstream_transcript_variant
rs1000660633 -- 70,635,131(+) G/A non_coding_transcript_variant
rs1000930255 -- 70,631,133(+) G/A non_coding_transcript_variant
rs1001267199 -- 70,633,860(+) C/T non_coding_transcript_variant
rs1003366364 -- 70,632,515(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SHANK2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv818850 CNV loss 17921354

Additional Variant Information for SHANK2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SHANK2-AS1 Gene

Disorders for SHANK2-AS1 Gene

Additional Disease Information for SHANK2-AS1

No disorders were found for SHANK2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHANK2-AS1 Gene

Publications for SHANK2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SHANK2-AS1 Gene

Sources for SHANK2-AS1 Gene

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