Aliases for SHANK2-AS1 Gene

Data sources for SHANK2-AS1 Gene:

RNA type for SHANK2-AS1 Gene

lncRNA

Aliases for SHANK2-AS1 Gene

External Ids for SHANK2-AS1 Gene

Previous GeneCards Identifiers for SHANK2-AS1 Gene

  • GC00U933960
  • GC11P070478

Summaries for SHANK2-AS1 Gene

GeneCards Summary for SHANK2-AS1 Gene

SHANK2-AS1 (SHANK2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SHANK2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SHANK2-AS1 Gene

Genomics for SHANK2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SHANK2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070626 Enhancer 0.6 FANTOM5 Ensembl 250.7 -0.8 -840 2 RFX1 PKNOX1 SHANK2-AS1 SHANK2 ENSG00000279459 CTTN
GH11J070628 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.7 +2.2 2160 2.8 ZNF341 RXRA RARA PRDM10 HNF4A TFAP4 BHLHE40 RFX1 KLF1 SHANK2 SHANK2-AS1 SHANK2-AS2 CTTN
GH11J070616 Enhancer 0.8 Ensembl CraniofacialAtlas 0.4 -9.1 -9140 0.6 PLRG1 HES1 CTBP1 NONO TEAD3 YBX1 ZNF512B ZBTB40 ARNT NFATC1 CTTN LTO1 SHANK2-AS1 ENSG00000279459 SHANK2
GH11J070638 Enhancer 0.9 Ensembl ENCODE 0.4 +12.0 11960 1.6 ZMYM3 FOXA2 SMAD4 SAP130 ETV4 RARA GABPB1 FOSL2 BCL6 KDM1A SHANK2-AS2 SHANK2-AS1 CTTN SHANK2
GH11J070607 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas 0.4 -16.1 -16140 5.4 ZIC2 CEBPB L3MBTL2 EZH2 POLR2A USF1 SCRT2 ENSG00000279459 SHANK2-AS1 CTTN SHANK2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SHANK2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SHANK2-AS1 Gene

Latest Assembly
chr11:70,626,441-70,635,658
(GRCh38/hg38)
Size:
9,218 bases
Orientation:
Plus strand

Previous Assembly
chr11:70,477,199-70,481,595
(GRCh37/hg19 by Entrez Gene)
Size:
4,397 bases
Orientation:
Plus strand

chr11:70,477,199-70,481,595
(GRCh37/hg19 by Ensembl)
Size:
4,397 bases
Orientation:
Plus strand

Genomic View for SHANK2-AS1 Gene

Genes around SHANK2-AS1 on UCSC Golden Path with GeneCards custom track
SHANK2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SHANK2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SHANK2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SHANK2-AS1 Gene

Proteins for SHANK2-AS1 Gene

Post-translational modifications for SHANK2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SHANK2-AS1 Gene

Domains & Families for SHANK2-AS1 Gene

Gene Families for SHANK2-AS1 Gene

genes like me logo Genes that share domains with SHANK2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SHANK2-AS1 Gene

Function for SHANK2-AS1 Gene

Phenotypes From GWAS Catalog for SHANK2-AS1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SHANK2-AS1 Gene

Localization for SHANK2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SHANK2-AS1 Gene

Pathways & Interactions for SHANK2-AS1 Gene

PathCards logo

SuperPathways for SHANK2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SHANK2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SHANK2-AS1 Gene

Drugs & Compounds for SHANK2-AS1 Gene

No Compound Related Data Available

Transcripts for SHANK2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SHANK2-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00001C3516_9606 lncRNA 2252 4

RefSeq: NR_046567,

Ensembl: ENST00000429561 (view in UCSC) ,

LNCipedia: SHANK2-AS1:1,

NONCODE: NONHSAT022668.2,

URS0000EF2362_9606 lncRNA 2822 1

Ensembl: ENST00000663650 (view in UCSC) ,

URS00009BDE5D_9606 lncRNA 2252 1

NONCODE: NONHSAT159362.1,

URS0001BE258B_9606 lncRNA 1599 1

LncBook: HSALNT0177797,

SHANK2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SHANK2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SHANK2-AS1 Gene

No ASD Table

Relevant External Links for SHANK2-AS1 Gene

GeneLoc Exon Structure for
SHANK2-AS1

Expression for SHANK2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SHANK2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SHANK2-AS1 Gene

This gene is overexpressed in Testis (x21.4), Brain - Cortex (x4.8), Brain - Frontal Cortex (BA9) (x4.3), and Pituitary (x4.2).

SOURCE GeneReport for Unigene cluster for SHANK2-AS1 Gene:

Hs.656610
genes like me logo Genes that share expression patterns with SHANK2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SHANK2-AS1 Gene

Orthologs for SHANK2-AS1 Gene

Evolution for SHANK2-AS1 Gene

ENSEMBL:
Gene Tree for SHANK2-AS1 (if available)
TreeFam:
Gene Tree for SHANK2-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for SHANK2-AS1

No data available for Orthologs for SHANK2-AS1 Gene

Paralogs for SHANK2-AS1 Gene

No data available for Paralogs for SHANK2-AS1 Gene

Variants for SHANK2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SHANK2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SHANK2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv818850 CNV loss 17921354

Additional Variant Information for SHANK2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SHANK2-AS1
Leiden Open Variation Database (LOVD)
SHANK2-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for SHANK2-AS1 Gene

Disorders for SHANK2-AS1 Gene

Additional Disease Information for SHANK2-AS1

No disorders were found for SHANK2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SHANK2-AS1 Gene

Publications for SHANK2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for SHANK2-AS1 Gene

Sources for SHANK2-AS1 Gene