SGO1P1 Gene (Pseudogene)

Shugoshin 1 Pseudogene 1

GC01M069607
GIFtS:
5
See more...

Aliases for SGO1P1 Gene

Aliases for SGO1P1 Gene

  • Shugoshin 1 Pseudogene 1 2 3 5
  • Shugoshin-Like 1 (S. Pombe) Pseudogene 1 2
  • Shugoshin-Like 1 Pseudogene 1 3
  • SGOL1P1 3
  • SGO1P1 5

External Ids for SGO1P1 Gene

Previous HGNC Symbols for SGO1P1 Gene

  • SGOL1P1

Summaries for SGO1P1 Gene

GeneCards Summary for SGO1P1 Gene

SGO1P1 (Shugoshin 1 Pseudogene 1) is a Pseudogene.

Additional gene information for SGO1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SGO1P1 Gene

Genomics for SGO1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SGO1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J069609 Enhancer 0.3 Ensembl 600.7 -1.8 -1800 0.6 JUN SPI1 SGO1P1 lnc-LRRC40-6 LRRC7 piR-51137-001 LRRC40
GH01J069566 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 0.3 +39.7 39712 4 TEAD4 IKZF1 LARP7 PRDM1 PHF21A ZSCAN4 POLR2A EZH2 ZNF600 NRF1 LRRC7 SGO1P1 lnc-LRRC40-6 LRRC40
GH01J069611 Enhancer 0.2 Ensembl 0.7 -3.4 -3400 0.2 LRRC7 SGO1P1 lnc-LRRC40-6 piR-51137-001 LRRC40
GH01J069574 Enhancer 0.2 FANTOM5 0.3 +33.7 33679 0.2 LRRC7 lnc-LRRC40-6 SGO1P1 LRRC40
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SGO1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SGO1P1 Gene

Genomic Locations for SGO1P1 Gene
chr1:69,606,855-69,608,301
(GRCh38/hg38)
Size:
1,447 bases
Orientation:
Minus strand
chr1:70,072,538-70,073,984
(GRCh37/hg19)
Size:
1,447 bases
Orientation:
Minus strand

Genomic View for SGO1P1 Gene

Genes around SGO1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SGO1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGO1P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SGO1P1 Gene

Proteins for SGO1P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SGO1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGO1P1 Gene

Domains & Families for SGO1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SGO1P1 Gene

Function for SGO1P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGO1P1 Gene

Localization for SGO1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SGO1P1 Gene

Pathways & Interactions for SGO1P1 Gene

PathCards logo

SuperPathways for SGO1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SGO1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SGO1P1 Gene

Drugs & Compounds for SGO1P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SGO1P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SGO1P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SGO1P1 Gene

No ASD Table

Relevant External Links for SGO1P1 Gene

GeneLoc Exon Structure for
SGO1P1

Expression for SGO1P1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SGO1P1 Gene

Orthologs for SGO1P1 Gene

Evolution for SGO1P1 Gene

ENSEMBL:
Gene Tree for SGO1P1 (if available)
TreeFam:
Gene Tree for SGO1P1 (if available)

No data available for Orthologs for SGO1P1 Gene

Paralogs for SGO1P1 Gene

No data available for Paralogs for SGO1P1 Gene

Variants for SGO1P1 Gene

Additional Variant Information for SGO1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SGO1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SGO1P1 Gene

Disorders for SGO1P1 Gene

No disorders were found for SGO1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SGO1P1 Gene

Publications for SGO1P1 Gene

No publications were found for SGO1P1 Gene.

ExternalLinks

View latest publications for SGO1P1 gene in Mastermind

Products for SGO1P1 Gene

Sources for SGO1P1 Gene