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Aliases for SGMS1-AS1 Gene

Subcategory (RNA class) for SGMS1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SGMS1-AS1 Gene

  • SGMS1 Antisense RNA 1 2 3 5

External Ids for SGMS1-AS1 Gene

Previous GeneCards Identifiers for SGMS1-AS1 Gene

  • GC00U935621

Summaries for SGMS1-AS1 Gene

GeneCards Summary for SGMS1-AS1 Gene

SGMS1-AS1 (SGMS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SGMS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SGMS1-AS1 Gene

Genomics for SGMS1-AS1 Gene

GeneHancer (GH) Regulatory Elements for SGMS1-AS1 Gene

Promoters and enhancers for SGMS1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SGMS1-AS1 Gene

Genomic Locations for SGMS1-AS1 Gene
chr10:50,624,951-50,641,451
(GRCh38/hg38)
Size:
16,501 bases
Orientation:
Plus strand

Genomic View for SGMS1-AS1 Gene

Genes around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SGMS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGMS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SGMS1-AS1 Gene

Proteins for SGMS1-AS1 Gene

Post-translational modifications for SGMS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGMS1-AS1 Gene

Domains & Families for SGMS1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SGMS1-AS1 Gene

Function for SGMS1-AS1 Gene

Phenotypes From GWAS Catalog for SGMS1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGMS1-AS1 Gene

Localization for SGMS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SGMS1-AS1 Gene

Pathways & Interactions for SGMS1-AS1 Gene

PathCards logo

SuperPathways for SGMS1-AS1 Gene

No Data Available

Interacting Proteins for SGMS1-AS1 Gene

Gene Ontology (GO) - Biological Process for SGMS1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SGMS1-AS1 Gene

Drugs & Compounds for SGMS1-AS1 Gene

No Compound Related Data Available

Transcripts for SGMS1-AS1 Gene

mRNA/cDNA for SGMS1-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SGMS1-AS1 Gene

No ASD Table

Relevant External Links for SGMS1-AS1 Gene

GeneLoc Exon Structure for
SGMS1-AS1
ECgene alternative splicing isoforms for
SGMS1-AS1

Expression for SGMS1-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SGMS1-AS1 Gene

Orthologs for SGMS1-AS1 Gene

Evolution for SGMS1-AS1 Gene

ENSEMBL:
Gene Tree for SGMS1-AS1 (if available)
TreeFam:
Gene Tree for SGMS1-AS1 (if available)

No data available for Orthologs for SGMS1-AS1 Gene

Paralogs for SGMS1-AS1 Gene

No data available for Paralogs for SGMS1-AS1 Gene

Variants for SGMS1-AS1 Gene

Sequence variations from dbSNP and Humsavar for SGMS1-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000116389 -- 50,627,865(+) A/G intron_variant
rs1000274505 -- 50,625,639(+) A/T intron_variant
rs1000870849 -- 50,626,836(+) C/A intron_variant
rs1001508420 -- 50,623,966(+) G/A upstream_transcript_variant
rs1001609570 -- 50,629,075(+) A/T non_coding_transcript_variant

Additional Variant Information for SGMS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SGMS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SGMS1-AS1 Gene

Disorders for SGMS1-AS1 Gene

Additional Disease Information for SGMS1-AS1

No disorders were found for SGMS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SGMS1-AS1 Gene

Publications for SGMS1-AS1 Gene

  1. Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs. (PMID: 24495672) Lin ST … Fu YH (Translational neurodegeneration 2014) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SGMS1-AS1 Gene

Sources for SGMS1-AS1 Gene

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