Aliases for SGMS1-AS1 Gene

Subcategory (RNA class) for SGMS1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SGMS1-AS1 Gene

  • SGMS1 Antisense RNA 1 2 3 5
  • SGMS1-AS1 2 5 165
  • NONHSAG005903.2 91
  • HSALNG0077963 164

External Ids for SGMS1-AS1 Gene

Previous GeneCards Identifiers for SGMS1-AS1 Gene

  • GC00U935621

Summaries for SGMS1-AS1 Gene

GeneCards Summary for SGMS1-AS1 Gene

SGMS1-AS1 (SGMS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SGMS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SGMS1-AS1 Gene

Genomics for SGMS1-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SGMS1-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SGMS1-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SGMS1-AS1 Gene

Genomic Locations for SGMS1-AS1 Gene
chr10:50,622,459-50,642,445
(GRCh38/hg38)
Size:
19,987 bases
Orientation:
Plus strand

Genomic View for SGMS1-AS1 Gene

Genes around SGMS1-AS1 on UCSC Golden Path with GeneCards custom track
SGMS1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SGMS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SGMS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SGMS1-AS1 Gene

Proteins for SGMS1-AS1 Gene

Post-translational modifications for SGMS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SGMS1-AS1 Gene

Domains & Families for SGMS1-AS1 Gene

Gene Families for SGMS1-AS1 Gene

genes like me logo Genes that share domains with SGMS1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SGMS1-AS1 Gene

Function for SGMS1-AS1 Gene

Phenotypes From GWAS Catalog for SGMS1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SGMS1-AS1 Gene

Localization for SGMS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SGMS1-AS1 Gene

Pathways & Interactions for SGMS1-AS1 Gene

PathCards logo

SuperPathways for SGMS1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SGMS1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SGMS1-AS1 Gene

Drugs & Compounds for SGMS1-AS1 Gene

No Compound Related Data Available

Transcripts for SGMS1-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SGMS1-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4E8F_9606 lncRNA 2585 4

HGNC: 49683,

RefSeq: NR_126411,

LncBook: HSALNT0162654,

LNCipedia: SGMS1-AS1:3,

URS0000405F92_9606 lncRNA 929 3

Ensembl: ENST00000609579 (view in UCSC) ,

LNCipedia: SGMS1-AS1:4,

NONCODE: NONHSAT155494.1,

URS0000EF4AD8_9606 lncRNA 12408 1

Ensembl: ENST00000443374 (view in UCSC) ,

URS0000EF60A3_9606 lncRNA 2376 1

Ensembl: ENST00000653493 (view in UCSC) ,

URS00008B54C0_9606 lncRNA 993 3

LncBook: HSALNT0162659,

LNCipedia: SGMS1-AS1:5,

NONCODE: NONHSAT013389.2,

SGMS1-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SGMS1-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SGMS1-AS1 Gene

No ASD Table

Relevant External Links for SGMS1-AS1 Gene

GeneLoc Exon Structure for
SGMS1-AS1

Expression for SGMS1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SGMS1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SGMS1-AS1 Gene

Orthologs for SGMS1-AS1 Gene

Evolution for SGMS1-AS1 Gene

ENSEMBL:
Gene Tree for SGMS1-AS1 (if available)
TreeFam:
Gene Tree for SGMS1-AS1 (if available)

No data available for Orthologs for SGMS1-AS1 Gene

Paralogs for SGMS1-AS1 Gene

No data available for Paralogs for SGMS1-AS1 Gene

Variants for SGMS1-AS1 Gene

Additional dbSNP identifiers (rs#s) for SGMS1-AS1 Gene

Additional Variant Information for SGMS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SGMS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SGMS1-AS1 Gene

Disorders for SGMS1-AS1 Gene

Additional Disease Information for SGMS1-AS1

No disorders were found for SGMS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SGMS1-AS1 Gene

Publications for SGMS1-AS1 Gene

  1. Regulation of Myelination in the Central Nervous System by Nuclear Lamin B1 and Non-coding RNAs. (PMID: 24495672) Lin ST … Fu YH (Translational neurodegeneration 2014) 2 3
  2. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for SGMS1-AS1 Gene

Sources for SGMS1-AS1 Gene