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Aliases for SFTA1P Gene

Aliases for SFTA1P Gene

  • Surfactant Associated 1, Pseudogene 2 3 5
  • Surfactant Associated Protein F 2 3
  • SFTPF 3

External Ids for SFTA1P Gene

Previous HGNC Symbols for SFTA1P Gene

  • SFTPF

Previous GeneCards Identifiers for SFTA1P Gene

  • GC10U901088
  • GC10M010827
  • GC10M010745

Summaries for SFTA1P Gene

GeneCards Summary for SFTA1P Gene

SFTA1P (Surfactant Associated 1, Pseudogene) is a Pseudogene.

Additional gene information for SFTA1P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SFTA1P Gene

Genomics for SFTA1P Gene

GeneHancer (GH) Regulatory Elements for SFTA1P Gene

Promoters and enhancers for SFTA1P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I010791 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 564.1 -0.9 -858 8.3 KLF1 ZBTB21 JUN INSM2 KLF17 ZNF366 PRDM10 ATF7 ZNF639 MAZ SFTA1P ENSG00000228997 CELF2
GH10I010804 Enhancer 1.2 Ensembl ENCODE dbSUPER 13.9 -10.4 -10440 1.8 INSM2 KLF17 MZF1 FEZF1 ZNF2 ZBTB40 ZNF335 SCRT2 KLF7 OVOL3 SFTA1P CELF2 PIR61379
GH10I010828 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 13.9 -35.5 -35466 2.9 ESRRA JUN MAX FOS SFTA1P ENSG00000228997 PIR61379 CELF2
GH10I010823 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 13.9 -30.5 -30504 3.1 JUN FOS NR2F2 SFTA1P ENSG00000228997 CELF2 PIR61379
GH10I010844 Enhancer 0.5 ENCODE dbSUPER 10.8 -49.7 -49672 1 RXRA SFTA1P ENSG00000228997 PIR61379 CELF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SFTA1P on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SFTA1P gene promoter:

Genomic Locations for SFTA1P Gene

Genomic Locations for SFTA1P Gene
chr10:10,784,437-10,794,980
(GRCh38/hg38)
Size:
10,544 bases
Orientation:
Minus strand
chr10:10,826,400-10,836,943
(GRCh37/hg19)

Genomic View for SFTA1P Gene

Genes around SFTA1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SFTA1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SFTA1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SFTA1P Gene

Proteins for SFTA1P Gene

Post-translational modifications for SFTA1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SFTA1P Gene

Domains & Families for SFTA1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SFTA1P Gene

Function for SFTA1P Gene

Phenotypes From GWAS Catalog for SFTA1P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SFTA1P Gene

Localization for SFTA1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SFTA1P Gene

Pathways & Interactions for SFTA1P Gene

SuperPathways for SFTA1P Gene

No Data Available

Interacting Proteins for SFTA1P Gene

Gene Ontology (GO) - Biological Process for SFTA1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SFTA1P Gene

Drugs & Compounds for SFTA1P Gene

No Compound Related Data Available

Transcripts for SFTA1P Gene

mRNA/cDNA for SFTA1P Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SFTA1P Gene

Surfactant associated 1, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SFTA1P Gene

No ASD Table

Relevant External Links for SFTA1P Gene

GeneLoc Exon Structure for
SFTA1P
ECgene alternative splicing isoforms for
SFTA1P

Expression for SFTA1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SFTA1P Gene

mRNA differential expression in normal tissues according to GTEx for SFTA1P Gene

This gene is overexpressed in Lung (x29.7).

NURSA nuclear receptor signaling pathways regulating expression of SFTA1P Gene:

SFTA1P

SOURCE GeneReport for Unigene cluster for SFTA1P Gene:

Hs.31562
genes like me logo Genes that share expression patterns with SFTA1P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SFTA1P Gene

Orthologs for SFTA1P Gene

Evolution for SFTA1P Gene

ENSEMBL:
Gene Tree for SFTA1P (if available)
TreeFam:
Gene Tree for SFTA1P (if available)

No data available for Orthologs for SFTA1P Gene

Paralogs for SFTA1P Gene

No data available for Paralogs for SFTA1P Gene

Variants for SFTA1P Gene

Sequence variations from dbSNP and Humsavar for SFTA1P Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000576181 -- 10,793,316(-) A/C intron_variant
rs1000592847 -- 10,786,744(-) A/G intron_variant
rs1000769576 -- 10,785,543(-) AAAAAAA/AAAAAA intron_variant
rs1000868325 -- 10,789,753(-) CCTCC/C intron_variant
rs1001042226 -- 10,787,134(-) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SFTA1P Gene

Variant ID Type Subtype PubMed ID
nsv549964 CNV loss 21841781
nsv1047445 CNV gain 25217958

Additional Variant Information for SFTA1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SFTA1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SFTA1P Gene

Disorders for SFTA1P Gene

Additional Disease Information for SFTA1P

No disorders were found for SFTA1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SFTA1P Gene

Publications for SFTA1P Gene

  1. Co-expression network analysis of long noncoding RNAs (IncRNAs) and cancer genes revealsSFTA1P and CASC2abnormalities in lung squamous cell carcinoma. (PMID: 28118064) Huang GQ … Gu B (Cancer biology & therapy 2017) 2 3 58
  2. The pseudogene-derived long noncoding RNA SFTA1P is down-regulated and suppresses cell migration and invasion in lung adenocarcinoma. (PMID: 28231733) Zhang H … Nie F (Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 2017) 2 3 58
  3. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W … Jiao S (Scientific reports 2014) 3 58
  4. GWAS of dental caries patterns in the permanent dentition. (PMID: 23064961) Shaffer JR … Marazita ML (Journal of dental research 2013) 3 58
  5. Genome-wide association of familial late-onset Alzheimer's disease replicates BIN1 and CLU and nominates CUGBP2 in interaction with APOE. (PMID: 21379329) Wijsman EM … NIA-LOAD/NCRAD Family Study Group (PLoS genetics 2011) 44 58

Products for SFTA1P Gene

Sources for SFTA1P Gene

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