SF3A3P2 Gene (Pseudogene)

Splicing Factor 3a, Subunit 3 Pseudogene 2

GC11M123596
GIFtS:
8
See more...

Aliases for SF3A3P2 Gene

Aliases for SF3A3P2 Gene

  • Splicing Factor 3a, Subunit 3 Pseudogene 2 2 3 5
  • Splicing Factor 3a, Subunit 3, 60kDa Pseudogene 3
  • SF3A3 Pseudogene 3
  • SF3A3P2 5

External Ids for SF3A3P2 Gene

Previous GeneCards Identifiers for SF3A3P2 Gene

  • GC11M122974
  • GC11M123467

Summaries for SF3A3P2 Gene

GeneCards Summary for SF3A3P2 Gene

SF3A3P2 (Splicing Factor 3a, Subunit 3 Pseudogene 2) is a Pseudogene.

Additional gene information for SF3A3P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SF3A3P2 Gene

Genomics for SF3A3P2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SF3A3P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J123601 Enhancer 0.3 ENCODE 250.7 -1.9 -1864 0.1 CEBPB SF3A3P2 HSALNG0087838 SCN3B GRAMD1B
GH11J123589 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +8.4 8369 2.7 JUND RXRA FOSL2 BHLHE40 SP1 HNRNPL FOS NR2F2 SIN3A SF3A3P2 MN309418 SCN3B GRAMD1B
GH11J123585 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +12.7 12732 4.3 FOXA2 ZNF316 FOSL2 RAD51 NFIA HNF1A HNRNPL XRCC5 FOS SOX13 MN309418 SF3A3P2 SCN3B GRAMD1B
GH11J123580 Enhancer 0.9 Ensembl ENCODE 0.4 +18.6 18573 1.4 ZNF654 ZNF600 ZNF10 CTCF TRIM22 ZNF341 ELF1 ZNF610 IRF4 SMC3 GRAMD1B MN309418 SF3A3P2 SCN3B
GH11J123593 Enhancer 0.4 ENCODE dbSUPER 0.4 +5.0 5006 1.1 PRDM10 SF3A3P2 MN309418 SCN3B GRAMD1B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SF3A3P2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SF3A3P2 Gene

Latest Assembly
chr11:123,596,738-123,599,474
(GRCh38/hg38)
Size:
2,737 bases
Orientation:
Minus strand

Previous Assembly
chr11:123,467,446-123,470,182
(GRCh37/hg19 by Entrez Gene)
Size:
2,737 bases
Orientation:
Minus strand

chr11:123,468,654-123,470,160
(GRCh37/hg19 by Ensembl)
Size:
1,507 bases
Orientation:
Minus strand

Genomic View for SF3A3P2 Gene

Genes around SF3A3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SF3A3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SF3A3P2 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SF3A3P2 Gene

Proteins for SF3A3P2 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SF3A3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SF3A3P2 Gene

Domains & Families for SF3A3P2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SF3A3P2 Gene

Function for SF3A3P2 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SF3A3P2 Gene

Localization for SF3A3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SF3A3P2 Gene

Pathways & Interactions for SF3A3P2 Gene

PathCards logo

SuperPathways for SF3A3P2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SF3A3P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SF3A3P2 Gene

Drugs & Compounds for SF3A3P2 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SF3A3P2 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for SF3A3P2 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SF3A3P2 Gene

No ASD Table

Relevant External Links for SF3A3P2 Gene

GeneLoc Exon Structure for
SF3A3P2

Expression for SF3A3P2 Gene

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  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SF3A3P2 Gene

mRNA expression in normal human tissues for SF3A3P2 Gene
mRNA expression by GTEx for SF3A3P2 Gene

mRNA differential expression in normal tissues according to GTEx for SF3A3P2 Gene

This gene is overexpressed in Brain - Cerebellum (x11.3), Brain - Cerebellar Hemisphere (x7.2), and Nerve - Tibial (x5.7).
genes like me logo Genes that share expression patterns with SF3A3P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SF3A3P2 Gene

Orthologs for SF3A3P2 Gene

Evolution for SF3A3P2 Gene

ENSEMBL:
Gene Tree for SF3A3P2 (if available)
TreeFam:
Gene Tree for SF3A3P2 (if available)
Alliance of Genome Resources:
Additional Orthologs for SF3A3P2

No data available for Orthologs for SF3A3P2 Gene

Paralogs for SF3A3P2 Gene

No data available for Paralogs for SF3A3P2 Gene

Variants for SF3A3P2 Gene

Additional Variant Information for SF3A3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SF3A3P2
Leiden Open Variation Database (LOVD)
SF3A3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SF3A3P2 Gene

Disorders for SF3A3P2 Gene

No disorders were found for SF3A3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SF3A3P2 Gene

Publications for SF3A3P2 Gene

No publications were found for SF3A3P2 Gene.

ExternalLinks

View latest publications for SF3A3P2 gene in Mastermind

Products for SF3A3P2 Gene

Sources for SF3A3P2 Gene