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Aliases for SF3A3P2 Gene
Aliases for SF3A3P2 Gene
External Ids for SF3A3P2 Gene
- HGNC: 23277
- Entrez Gene: 449645
- Ensembl: ENSG00000254449
Previous GeneCards Identifiers for SF3A3P2 Gene
- GC11M122974
- GC11M123467
Summaries for SF3A3P2 Gene
GeneCards Summary for SF3A3P2 Gene
SF3A3P2 (Splicing Factor 3a, Subunit 3 Pseudogene 2) is a Pseudogene.
Additional gene information for SF3A3P2 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SF3A3P2 Gene
Genomics for SF3A3P2 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for SF3A3P2 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J123601 | Enhancer | 0.3 | ENCODE | 600.7 | -1.9 | -1864 | 0.1 | CEBPB | SF3A3P2 lnc-OR8D4-4 SCN3B GRAMD1B | |
| GH11J123589 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.4 | +8.4 | 8369 | 2.7 | HNRNPL SP1 JUND NR2F2 FOSL2 SIN3A BHLHE40 RXRA JUN MAX | SF3A3P2 MN309418 SCN3B GRAMD1B | |
| GH11J123585 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 0.4 | +12.6 | 12632 | 4.1 | HNRNPL PRDM1 REST SOX13 SP1 NR3C1 ZNF316 FOXA2 FOSL2 SIN3A | MN309418 SF3A3P2 SCN3B GRAMD1B | |
| GH11J123580 | Enhancer | 1 | Ensembl ENCODE | 0.4 | +18.3 | 18273 | 2 | ARHGAP35 CTCF TEAD4 KDM1A FOXA1 ZNF143 RAD21 TCF12 TRIM22 ZNF600 | GRAMD1B MN309418 SF3A3P2 SCN3B | |
| GH11J123593 | Enhancer | 0.6 | Ensembl ENCODE dbSUPER | 0.4 | +5.0 | 5006 | 1.1 | PRDM10 | SF3A3P2 MN309418 SCN3B GRAMD1B |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around SF3A3P2 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for SF3A3P2 Gene
Genomic Locations for SF3A3P2 Gene
- chr11:123,596,738-123,599,474
- (GRCh38/hg38)
- Size:
- 2,737 bases
- Orientation:
- Minus strand
- chr11:123,467,446-123,470,182
- (GRCh37/hg19)
- Size:
- 2,737 bases
- Orientation:
- Minus strand
Genomic View for SF3A3P2 Gene
Genes around SF3A3P2 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q24.1 by HGNC
- 11q24.1 by Entrez Gene
- 11q24.1 by Ensembl
SF3A3P2 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for SF3A3P2 Gene
Proteins for SF3A3P2 Gene
Post-translational modifications for SF3A3P2 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SF3A3P2
- Origene Custom Protein Services for SF3A3P2
No data available for DME Specific Peptides for SF3A3P2 Gene
Domains & Families for SF3A3P2 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SF3A3P2 Gene
Function for SF3A3P2 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SF3A3P2 - Select products 50% OFF >
- * SF3A3P2 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SF3A3P2
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SF3A3P2 Gene
Localization for SF3A3P2 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SF3A3P2 Gene
Transcripts for SF3A3P2 Gene
mRNA/cDNA for SF3A3P2 Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000528675 1507 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for SF3A3P2 - Select products 50% OFF >
- * SF3A3P2 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for SF3A3P2
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for SF3A3P2 Gene
- GeneLoc Exon Structure for
- SF3A3P2
Expression for SF3A3P2 Gene
mRNA differential expression in normal tissues according to GTEx for SF3A3P2 Gene
This gene is overexpressed in Brain - Cerebellum (x11.3), Brain - Cerebellar Hemisphere (x7.2), and Nerve - Tibial (x5.7).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SF3A3P2 Gene
Orthologs for SF3A3P2 Gene
No data available for Orthologs for SF3A3P2 Gene
Paralogs for SF3A3P2 Gene
No data available for Paralogs for SF3A3P2 Gene
Variants for SF3A3P2 Gene
Additional Variant Information for SF3A3P2 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- SF3A3P2
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SF3A3P2 Gene
Disorders for SF3A3P2 Gene
Additional Disease Information for SF3A3P2
- Genetic Association Database
- (GAD)
No disorders were found for SF3A3P2 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SF3A3P2 Gene
Publications for SF3A3P2 Gene
No publications were found for SF3A3P2 Gene.
ExternalLinks
Products for SF3A3P2 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for SF3A3P2
- Origene Custom Protein Services for SF3A3P2
- Browse OriGene Inhibitory RNA Products For SF3A3P2
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for SF3A3P2
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For SF3A3P2
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for SF3A3P2
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for SF3A3P2
- Search GeneCopoeia for miRNA 3'UTR Target clone products for SF3A3P2
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for SF3A3P2
Sources for SF3A3P2 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB