Aliases for SETP9 Gene

Aliases for SETP9 Gene

  • SET Pseudogene 9 2 3 5
  • SET Nuclear Oncogene Pseudogene 3

External Ids for SETP9 Gene

Previous GeneCards Identifiers for SETP9 Gene

  • GC01P160641

Summaries for SETP9 Gene

GeneCards Summary for SETP9 Gene

SETP9 (SET Pseudogene 9) is a Pseudogene.

Additional gene information for SETP9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SETP9 Gene

Genomics for SETP9 Gene

GeneHancer (GH) Regulatory Elements for SETP9 Gene

Promoters and enhancers for SETP9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J160671 Enhancer 0.2 dbSUPER 500.7 +1.2 1172 0.4 ENSG00000228863 SETP9 piR-44110-004
GH01J160635 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.5 -28.0 -27974 12.9 SIN3A SP1 POLR2A RELA RCOR1 TRIM22 TEAD1 NFYB TCF12 CBFB SLAMF1 ENSG00000228863 SETP9 ENSG00000237409 PPOX SLAMF6 CD48 piR-50968-010
GH01J160672 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 7.7 +4.0 3978 4.8 CTCF REST RAD21 TRIM22 POLR2A SMC3 TCF12 NBN SMARCA5 IRF4 SETP9 ENSG00000228863 piR-44110-004
GH01J160663 Enhancer 1.1 ENCODE dbSUPER 8.5 -4.9 -4879 2.6 GTF2E2 AFF1 MYC TAF9B HDAC3 NR2F2 RELA NCOR1 NFRKB NFIC ITLN1 SETP9 SLAMF1 HSALNG0007853
GH01J160650 Enhancer 1 ENCODE dbSUPER 8.2 -17.5 -17516 3.9 USF1 RELA CTBP1 POLR2A NFIC ZNF592 GTF2A2 PBX2 KLF13 IRF1 SETP9 SLAMF1 HSALNG0007853
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SETP9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SETP9 Gene

Genomic Locations for SETP9 Gene
chr1:160,670,148-160,670,981
(GRCh38/hg38)
Size:
834 bases
Orientation:
Plus strand
chr1:160,639,938-160,640,771
(GRCh37/hg19)
Size:
834 bases
Orientation:
Plus strand

Genomic View for SETP9 Gene

Genes around SETP9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP9 Gene

Proteins for SETP9 Gene

Post-translational modifications for SETP9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP9 Gene

Domains & Families for SETP9 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SETP9 Gene

Function for SETP9 Gene

Phenotypes From GWAS Catalog for SETP9 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP9 Gene

Localization for SETP9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP9 Gene

Pathways & Interactions for SETP9 Gene

PathCards logo

SuperPathways for SETP9 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SETP9 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SETP9 Gene

Drugs & Compounds for SETP9 Gene

No Compound Related Data Available

Transcripts for SETP9 Gene

mRNA/cDNA for SETP9 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SETP9 Gene

No ASD Table

Relevant External Links for SETP9 Gene

GeneLoc Exon Structure for
SETP9

Expression for SETP9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SETP9 Gene

mRNA expression in normal human tissues for SETP9 Gene
genes like me logo Genes that share expression patterns with SETP9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP9 Gene

Orthologs for SETP9 Gene

Evolution for SETP9 Gene

ENSEMBL:
Gene Tree for SETP9 (if available)
TreeFam:
Gene Tree for SETP9 (if available)

No data available for Orthologs for SETP9 Gene

Paralogs for SETP9 Gene

No data available for Paralogs for SETP9 Gene

Variants for SETP9 Gene

Additional Variant Information for SETP9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP9 Gene

Disorders for SETP9 Gene

Additional Disease Information for SETP9

No disorders were found for SETP9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SETP9 Gene

Publications for SETP9 Gene

No publications were found for SETP9 Gene.

Products for SETP9 Gene

Sources for SETP9 Gene