Aliases for SETP17 Gene

Aliases for SETP17 Gene

  • SET Pseudogene 17 2 3 5
  • SET Nuclear Oncogene Pseudogene 3
  • SETP17 5

External Ids for SETP17 Gene

Previous GeneCards Identifiers for SETP17 Gene

  • GC11P086005

Summaries for SETP17 Gene

GeneCards Summary for SETP17 Gene

SETP17 (SET Pseudogene 17) is a Pseudogene.

Additional gene information for SETP17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SETP17 Gene

Genomics for SETP17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SETP17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J086292 Enhancer 0.6 ENCODE 600.7 -1.6 -1631 0.2 IKZF2 PKNOX1 EED DPF2 RELB NR2F1 JUNB IRF4 BATF IKZF1 SETP17 lnc-HIKESHI-2 HIKESHI lnc-ME3-1 EED
GH11J086293 Enhancer 0.5 ENCODE 600.7 -1.3 -1251 0.2 EED RELB RUNX3 JUNB IKZF1 SETP17 lnc-HIKESHI-2 EED HIKESHI lnc-ME3-1
GH11J086481 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.2 +189.5 189496 8 PRDM10 ZNF629 IKZF1 BACH1 JUND PKNOX1 PATZ1 REST NR2C1 IKZF2 ME3 TMEM126B PRSS23 CCDC81 SETP17 piR-31210-010 piR-33338 ENSG00000254733
GH11J086676 Enhancer 1 Ensembl ENCODE dbSUPER 4.4 +383.1 383096 3.6 CTCF TEAD4 PRDM10 RFX5 REST ZNF341 NFE2 ZBTB17 YY1 JUND piR-56197 ME3 SETP17 ME3-DT ENSG00000254731 lnc-PRSS23-4 PRSS23
GH11J086291 Enhancer 1 Ensembl ENCODE 0.7 -2.8 -2829 0.9 CREB1 CTCF NFKBIZ RCOR2 ZNF143 RXRB REST RAD21 SP1 BRD9 EED ENSG00000255005 SETP17 lnc-ME3-1 HIKESHI
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SETP17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SETP17 Gene

Genomic Locations for SETP17 Gene
chr11:86,294,705-86,295,746
(GRCh38/hg38)
Size:
1,042 bases
Orientation:
Plus strand
chr11:86,005,802-86,006,620
(GRCh37/hg19)
Size:
819 bases
Orientation:
Plus strand

Genomic View for SETP17 Gene

Genes around SETP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP17 Gene

Proteins for SETP17 Gene

Post-translational modifications for SETP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP17 Gene

Domains & Families for SETP17 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SETP17 Gene

Function for SETP17 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP17 Gene

Localization for SETP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP17 Gene

Pathways & Interactions for SETP17 Gene

PathCards logo

SuperPathways for SETP17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SETP17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SETP17 Gene

Drugs & Compounds for SETP17 Gene

No Compound Related Data Available

Transcripts for SETP17 Gene

mRNA/cDNA for SETP17 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SETP17 Gene

No ASD Table

Relevant External Links for SETP17 Gene

GeneLoc Exon Structure for
SETP17

Expression for SETP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SETP17 Gene

genes like me logo Genes that share expression patterns with SETP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP17 Gene

Orthologs for SETP17 Gene

Evolution for SETP17 Gene

ENSEMBL:
Gene Tree for SETP17 (if available)
TreeFam:
Gene Tree for SETP17 (if available)

No data available for Orthologs for SETP17 Gene

Paralogs for SETP17 Gene

No data available for Paralogs for SETP17 Gene

Variants for SETP17 Gene

Additional Variant Information for SETP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP17 Gene

Disorders for SETP17 Gene

Additional Disease Information for SETP17

No disorders were found for SETP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SETP17 Gene

Publications for SETP17 Gene

No publications were found for SETP17 Gene.

Products for SETP17 Gene

Sources for SETP17 Gene