Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SETP17 Gene

Subcategory (RNA class) for SETP17 Gene

lncRNA

Aliases for SETP17 Gene

  • SET Pseudogene 17 2 3 5
  • SET Nuclear Oncogene Pseudogene 3

External Ids for SETP17 Gene

ORGUL Members for SETP17 Gene

Previous GeneCards Identifiers for SETP17 Gene

  • GC11P086005

Summaries for SETP17 Gene

GeneCards Summary for SETP17 Gene

SETP17 (SET Pseudogene 17) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for SETP17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SETP17 Gene

Genomics for SETP17 Gene

GeneHancer (GH) Regulatory Elements for SETP17 Gene

Promoters and enhancers for SETP17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J086292 Enhancer 0.6 ENCODE 650.7 -1.7 -1686 0.2 PKNOX1 NR2F1 JUNB DPF2 BATF IRF4 EED IKZF1 ETV6 CREM SETP17 LOC100289518
GH11J086293 Enhancer 0.5 ENCODE 650.7 -1.3 -1306 0.2 IKZF1 EED JUNB RUNX3 SPI1 SETP17 EED LOC100289518
GH11J086676 Enhancer 0.8 ENCODE dbSUPER 4.4 +381.7 381662 0.8 CTCF REST RAD21 RFX5 TEAD3 SP1 ZNF341 ZNF143 NFE2 PIR50196 ME3 SETP17 GC11M086573
GH11J086291 Enhancer 1 Ensembl ENCODE 0.7 -2.8 -2759 0.4 FOXA2 RB1 ARID4B RAD21 ARID2 ZNF143 BCLAF1 RUNX3 NFKBIZ HMG20B EED SETP17 LOC100289518
GH11J086288 Enhancer 0.8 ENCODE 0.4 -7.5 -7466 0.2 STAT5A BMI1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CREM EED ENSG00000255005 LOC100289518 SETP17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SETP17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SETP17 Gene

Genomic Locations for SETP17 Gene
chr11:86,294,760-86,295,578
(GRCh38/hg38)
Size:
819 bases
Orientation:
Plus strand
chr11:86,005,802-86,006,620
(GRCh37/hg19)

Genomic View for SETP17 Gene

Genes around SETP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP17 Gene

Function for SETP17 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP17 Gene

Localization for SETP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP17 Gene

Pathways & Interactions for SETP17 Gene

SuperPathways for SETP17 Gene

No Data Available

Interacting Proteins for SETP17 Gene

Gene Ontology (GO) - Biological Process for SETP17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETP17 Gene

Drugs & Compounds for SETP17 Gene

No Compound Related Data Available

Transcripts for SETP17 Gene

mRNA/cDNA for SETP17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SETP17 Gene

No ASD Table

Relevant External Links for SETP17 Gene

GeneLoc Exon Structure for
SETP17
ECgene alternative splicing isoforms for
SETP17

Expression for SETP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SETP17 Gene

NURSA nuclear receptor signaling pathways regulating expression of SETP17 Gene:

SETP17
genes like me logo Genes that share expression patterns with SETP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP17 Gene

Orthologs for SETP17 Gene

Evolution for SETP17 Gene

ENSEMBL:
Gene Tree for SETP17 (if available)
TreeFam:
Gene Tree for SETP17 (if available)

No data available for Orthologs for SETP17 Gene

Paralogs for SETP17 Gene

No data available for Paralogs for SETP17 Gene

Variants for SETP17 Gene

Additional Variant Information for SETP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP17 Gene

Disorders for SETP17 Gene

Additional Disease Information for SETP17

No disorders were found for SETP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SETP17 Gene

Publications for SETP17 Gene

No publications were found for SETP17 Gene.

Products for SETP17 Gene

Sources for SETP17 Gene

Content
Loading form....