Aliases for SETP16 Gene

Aliases for SETP16 Gene

  • SET Pseudogene 16 2 3 5
  • SET Nuclear Oncogene Pseudogene 3
  • SETP16 5

External Ids for SETP16 Gene

Previous GeneCards Identifiers for SETP16 Gene

  • GC11M118709

Summaries for SETP16 Gene

GeneCards Summary for SETP16 Gene

SETP16 (SET Pseudogene 16) is a Pseudogene.

Additional gene information for SETP16 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SETP16 Gene

Genomics for SETP16 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SETP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J118834 Promoter/Enhancer 1.1 Ensembl ENCODE dbSUPER 250.7 -0.1 -125 0.9 YY1 IRF2 RXRA ZBTB33 ZFP91 JUND MYC MAX HNF4A SP1 ENSG00000201535 HSALNG0087575 HSALNG0087576 SETP16 LOC105369519 TREHP1 DDX6 CXCR5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SETP16 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SETP16 Gene

Latest Assembly
chr11:118,833,607-118,834,612
(GRCh38/hg38)
Size:
1,006 bases
Orientation:
Minus strand

Previous Assembly
chr11:118,704,316-118,705,321
(GRCh37/hg19 by Entrez Gene)
Size:
1,006 bases
Orientation:
Minus strand

chr11:118,704,555-118,705,265
(GRCh37/hg19 by Ensembl)
Size:
711 bases
Orientation:
Minus strand

Genomic View for SETP16 Gene

Genes around SETP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP16 Gene

Proteins for SETP16 Gene

Post-translational modifications for SETP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP16 Gene

Domains & Families for SETP16 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SETP16 Gene

Function for SETP16 Gene

Phenotypes From GWAS Catalog for SETP16 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP16 Gene

Localization for SETP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP16 Gene

Pathways & Interactions for SETP16 Gene

PathCards logo

SuperPathways for SETP16 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SETP16 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SETP16 Gene

Drugs & Compounds for SETP16 Gene

No Compound Related Data Available

Transcripts for SETP16 Gene

mRNA/cDNA for SETP16 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SETP16 Gene

No ASD Table

Relevant External Links for SETP16 Gene

GeneLoc Exon Structure for
SETP16

Expression for SETP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SETP16 Gene

genes like me logo Genes that share expression patterns with SETP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP16 Gene

Orthologs for SETP16 Gene

Evolution for SETP16 Gene

ENSEMBL:
Gene Tree for SETP16 (if available)
TreeFam:
Gene Tree for SETP16 (if available)
Alliance of Genome Resources:
Additional Orthologs for SETP16

No data available for Orthologs for SETP16 Gene

Paralogs for SETP16 Gene

No data available for Paralogs for SETP16 Gene

Variants for SETP16 Gene

Additional Variant Information for SETP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP16
Leiden Open Variation Database (LOVD)
SETP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP16 Gene

Disorders for SETP16 Gene

Additional Disease Information for SETP16

No disorders were found for SETP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SETP16 Gene

Publications for SETP16 Gene

No publications were found for SETP16 Gene.

Products for SETP16 Gene

Sources for SETP16 Gene