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Aliases for SETP11 Gene

Subcategory (RNA class) for SETP11 Gene

antisense

Aliases for SETP11 Gene

  • SET Pseudogene 11 2 3 5

External Ids for SETP11 Gene

ORGUL Members for SETP11 Gene

Previous GeneCards Identifiers for SETP11 Gene

  • GC03P150989

Summaries for SETP11 Gene

GeneCards Summary for SETP11 Gene

SETP11 (SET Pseudogene 11) is a Pseudogene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for SETP11 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for SETP11

Additional gene information for SETP11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SETP11 Gene

Genomics for SETP11 Gene

GeneHancer (GH) Regulatory Elements for SETP11 Gene

Promoters and enhancers for SETP11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I151268 Enhancer 0.6 ENCODE dbSUPER 550.8 -0.7 -654 0.9 NR2F1 IKZF1 RUNX3 SETP11 P2RY14 GC03P151250 MED12L
GH03I151269 Enhancer 0.4 FANTOM5 dbSUPER 550.8 +0.2 225 0.4 SETP11 P2RY12 MED12L GC03P151277 P2RY14
GH03I151264 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -3.5 -3539 2.2 RFX1 BCL11A EBF1 BMI1 IRF4 SPI1 P2RY14 GPR87 SETP11 GC03P151250 MED12L
GH03I151271 Enhancer 0.2 dbSUPER 0.8 +2.6 2557 1 GPR87 P2RY14 SETP11 GC03P151277 MED12L
GH03I151259 Enhancer 0.4 ENCODE dbSUPER 0.4 -10.0 -9964 0.1 SETP11 GC03P151250 P2RY14 MED12L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SETP11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SETP11 Gene

Genomic Locations for SETP11 Gene
chr3:151,269,438-151,270,131
(GRCh38/hg38)
Size:
694 bases
Orientation:
Plus strand
chr3:150,987,226-150,987,919
(GRCh37/hg19)

Genomic View for SETP11 Gene

Genes around SETP11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SETP11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SETP11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SETP11 Gene

ORGUL Member Location for SETP11 Gene

ORGUL Member Location for SETP11 gene

Proteins for SETP11 Gene

Post-translational modifications for SETP11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SETP11 Gene

Domains & Families for SETP11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SETP11 Gene

Function for SETP11 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SETP11 Gene

Localization for SETP11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SETP11 Gene

Pathways & Interactions for SETP11 Gene

SuperPathways for SETP11 Gene

No Data Available

Interacting Proteins for SETP11 Gene

Gene Ontology (GO) - Biological Process for SETP11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SETP11 Gene

Drugs & Compounds for SETP11 Gene

No Compound Related Data Available

Transcripts for SETP11 Gene

fRNAdb Secondary structures for SETP11 Gene

  • FR184000

mRNA/cDNA for SETP11 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SETP11 Gene

No ASD Table

Relevant External Links for SETP11 Gene

GeneLoc Exon Structure for
SETP11
ECgene alternative splicing isoforms for
SETP11

Expression for SETP11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SETP11 Gene

NURSA nuclear receptor signaling pathways regulating expression of SETP11 Gene:

SETP11
genes like me logo Genes that share expression patterns with SETP11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SETP11 Gene

Orthologs for SETP11 Gene

Evolution for SETP11 Gene

ENSEMBL:
Gene Tree for SETP11 (if available)
TreeFam:
Gene Tree for SETP11 (if available)

No data available for Orthologs for SETP11 Gene

Paralogs for SETP11 Gene

No data available for Paralogs for SETP11 Gene

Variants for SETP11 Gene

Additional Variant Information for SETP11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SETP11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SETP11 Gene

Disorders for SETP11 Gene

Additional Disease Information for SETP11

No disorders were found for SETP11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SETP11 Gene

Publications for SETP11 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for SETP11 Gene

Sources for SETP11 Gene

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