Aliases for SERPINA13P Gene

Aliases for SERPINA13P Gene

  • Serpin Family A Member 13, Pseudogene 2 3 5
  • Serine (Or Cysteine) Proteinase Inhibitor, Clade A (Alpha-1 Antiproteinase, Antitrypsin), Member 13 2 3
  • SERPINA13 3 4
  • UNQ6121 2 3
  • Serpin Peptidase Inhibitor, Clade A (Alpha-1 Antiproteinase, Antitrypsin), Member 13 (Pseudogene) 3
  • Serpin Peptidase Inhibitor, Clade A (Alpha-1 Antiproteinase, Antitrypsin), Member 13, Pseudogene 2
  • Serpin Peptidase Inhibitor, Clade A (Alpha-1 Antiproteinase, Antitrypsin), Member 13 2
  • Putative Serpin A13 4
  • Protease Inhibitor 3
  • SERPINA13P 5

External Ids for SERPINA13P Gene

Previous HGNC Symbols for SERPINA13P Gene

  • SERPINA13

Previous GeneCards Identifiers for SERPINA13P Gene

  • GC14P095109

Summaries for SERPINA13P Gene

GeneCards Summary for SERPINA13P Gene

SERPINA13P (Serpin Family A Member 13, Pseudogene) is a Pseudogene.

Additional gene information for SERPINA13P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SERPINA13P Gene

Genomics for SERPINA13P Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SERPINA13P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J094639 Enhancer 0.5 Ensembl 250.7 -1.5 -1524 0.4 MAFF GATAD1 MAFK ZNF24 GATAD2A ZKSCAN8 YY1 SP1 HSALNG0103381 SERPINA13P SERPINA3 GSC
GH14J094640 Enhancer 0.3 Ensembl 250.7 +0.1 76 0.4 FOSL2 FOS SERPINA13P lnc-SERPINA3-3 SERPINA3 GSC
GH14J094638 Enhancer 0.5 Ensembl 0.7 -2.1 -2124 0.4 ZSCAN4 HLF EGR2 FOS ZFHX2 HSALNG0103381 SERPINA13P SERPINA3 GSC
GH14J094646 Enhancer 0.5 Ensembl 0.4 +6.0 5994 0.4 RARA JUND ELF3 EGR2 ZFHX2 SERPINA3 FAM181A lnc-SERPINA3-3 SERPINA13P piR-36393-160 GSC
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SERPINA13P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SERPINA13P Gene

Latest Assembly
chr14:94,640,725-94,646,994
(GRCh38/hg38)
Size:
6,270 bases
Orientation:
Plus strand

Previous Assembly
chr14:95,107,062-95,113,331
(GRCh37/hg19 by Entrez Gene)
Size:
6,270 bases
Orientation:
Plus strand

chr14:95,107,062-95,113,331
(GRCh37/hg19 by Ensembl)
Size:
6,270 bases
Orientation:
Plus strand

Genomic View for SERPINA13P Gene

Genes around SERPINA13P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SERPINA13P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SERPINA13P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SERPINA13P Gene

Proteins for SERPINA13P Gene

  • Protein details for SERPINA13P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UXR4-SPA13_HUMAN
    Recommended name:
    Putative serpin A13
    Protein Accession:
    Q6UXR4

    Protein attributes for SERPINA13P Gene

    Size:
    307 amino acids
    Molecular mass:
    34864 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SERPINA13P Gene

Post-translational modifications for SERPINA13P Gene

  • Glycosylation at Asn150 and Asn250

No data available for DME Specific Peptides for SERPINA13P Gene

Domains & Families for SERPINA13P Gene

Gene Families for SERPINA13P Gene

Protein Domains for SERPINA13P Gene

Suggested Antigen Peptide Sequences for SERPINA13P Gene

GenScript: Design optimal peptide antigens:
  • Putative serpin A13 (SPA13_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q6UXR4

UniProtKB/Swiss-Prot:

SPA13_HUMAN :
  • Belongs to the serpin family.
Family:
  • Belongs to the serpin family.
genes like me logo Genes that share domains with SERPINA13P: view

Function for SERPINA13P Gene

Phenotypes From GWAS Catalog for SERPINA13P Gene

genes like me logo Genes that share phenotypes with SERPINA13P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SERPINA13P Gene

Localization for SERPINA13P Gene

Subcellular locations from UniProtKB/Swiss-Prot for SERPINA13P Gene

Secreted.

No data available for Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SERPINA13P Gene

Pathways & Interactions for SERPINA13P Gene

PathCards logo

SuperPathways for SERPINA13P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SERPINA13P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SERPINA13P Gene

Drugs & Compounds for SERPINA13P Gene

No Compound Related Data Available

Transcripts for SERPINA13P Gene

mRNA/cDNA for SERPINA13P Gene

1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SERPINA13P Gene

No ASD Table

Relevant External Links for SERPINA13P Gene

GeneLoc Exon Structure for
SERPINA13P

Expression for SERPINA13P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SERPINA13P Gene

Protein differential expression in normal tissues from HIPED for SERPINA13P Gene

This gene is overexpressed in Spinal cord (50.4) and Testis (18.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SERPINA13P Gene



Protein tissue co-expression partners for SERPINA13P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SERPINA13P

SOURCE GeneReport for Unigene cluster for SERPINA13P Gene:

Hs.527795
genes like me logo Genes that share expression patterns with SERPINA13P: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SERPINA13P Gene

Orthologs for SERPINA13P Gene

Evolution for SERPINA13P Gene

ENSEMBL:
Gene Tree for SERPINA13P (if available)
TreeFam:
Gene Tree for SERPINA13P (if available)

No data available for Orthologs for SERPINA13P Gene

Paralogs for SERPINA13P Gene

(9) SIMAP similar genes for SERPINA13P Gene using alignment to 1 proteins:

  • SPA13_HUMAN
genes like me logo Genes that share paralogs with SERPINA13P: view

No data available for Paralogs for SERPINA13P Gene

Variants for SERPINA13P Gene

Structural Variations from Database of Genomic Variants (DGV) for SERPINA13P Gene

Variant ID Type Subtype PubMed ID
esv3635384 CNV gain 21293372
nsv470662 CNV gain 18288195
nsv832865 CNV gain 17160897

Additional Variant Information for SERPINA13P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SERPINA13P

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for SERPINA13P Gene

Disorders for SERPINA13P Gene

Additional Disease Information for SERPINA13P

No disorders were found for SERPINA13P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SERPINA13P Gene

Publications for SERPINA13P Gene

  1. Update of the human and mouse SERPIN gene superfamily. (PMID: 24172014) Heit C … Vasiliou V (Human genomics 2013) 2 3
  2. Human-specific nonsense mutations identified by genome sequence comparisons. (PMID: 16395595) Hahn Y … Lee B (Human genetics 2006) 2 3
  3. Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1. (PMID: 15014966) Namciu SJ … Fournier RE (Mammalian genome : official journal of the International Mammalian Genome Society 2004) 2 3
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 4
  5. Variability in the common genetic architecture of social-communication spectrum phenotypes during childhood and adolescence. (PMID: 24564958) St Pourcain B … Smith GD (Molecular autism 2014) 3

Products for SERPINA13P Gene

Sources for SERPINA13P Gene