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Aliases for SERF2-C15ORF63 Gene

Subcategory (RNA class) for SERF2-C15ORF63 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for SERF2-C15ORF63 Gene

  • SERF2-C15orf63 Readthrough 3

External Ids for SERF2-C15ORF63 Gene

Previous GeneCards Identifiers for SERF2-C15ORF63 Gene

  • GC15U901309
  • GC15P044093
  • GC15P044096

Summaries for SERF2-C15ORF63 Gene

Entrez Gene Summary for SERF2-C15ORF63 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring small EDRK-rich factor 2 (SERF2) and chromosome 15 open reading frame 63 (C15orf63) genes. The read-through transcript is a candidate for nonsense-mediated mRNA decay (NMD) based on the use of the supported SERF2 start codon, and is therefore unlikely to produce a protein product. [provided by RefSeq, Dec 2010]

GeneCards Summary for SERF2-C15ORF63 Gene

SERF2-C15ORF63 (SERF2-C15orf63 Readthrough) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for SERF2-C15ORF63 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SERF2-C15ORF63 Gene

Genomics for SERF2-C15ORF63 Gene

GeneHancer (GH) Regulatory Elements for SERF2-C15ORF63 Gene

Promoters and enhancers for SERF2-C15ORF63 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I043791 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 0.8 +4.5 4519 10.5 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC MEF2D GC15M043788 GC15P043795 HYPK PIR54305 SERINC4 SERF2 SPG11 CTDSPL2 ENSG00000259563 RPS3AP47
GH15I043788 Enhancer 0.6 ENCODE 0.8 -2.9 -2935 1.7 HDGF ZNF189 NR2F1 DPF2 RELA ZNF217 POLR2A EGR1 NBN MLLT1 ADAL STRCP1 SERF2-C15ORF63 GC15M043788 ENSG00000262560 ELL3 SERF2
GH15I043781 Enhancer 0.2 FANTOM5 0.4 -10.3 -10257 0.4 STRCP1 MFAP1 WDR76 ELL3 SERF2 SERF2-C15ORF63 ENSG00000262560
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SERF2-C15ORF63 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SERF2-C15ORF63 Gene

Genomic Locations for SERF2-C15ORF63 Gene
chr15:43,791,976-43,802,589
(GRCh38/hg38)
Size:
10,614 bases
Orientation:
Plus strand
chr15:44,084,174-44,094,787
(GRCh37/hg19)

Genomic View for SERF2-C15ORF63 Gene

Genes around SERF2-C15ORF63 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SERF2-C15ORF63 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SERF2-C15ORF63 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SERF2-C15ORF63 Gene

Proteins for SERF2-C15ORF63 Gene

Post-translational modifications for SERF2-C15ORF63 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SERF2-C15ORF63 Gene

Domains & Families for SERF2-C15ORF63 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SERF2-C15ORF63 Gene

Function for SERF2-C15ORF63 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SERF2-C15ORF63 Gene

Localization for SERF2-C15ORF63 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SERF2-C15ORF63 Gene

Pathways & Interactions for SERF2-C15ORF63 Gene

SuperPathways for SERF2-C15ORF63 Gene

No Data Available

Interacting Proteins for SERF2-C15ORF63 Gene

Gene Ontology (GO) - Biological Process for SERF2-C15ORF63 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SERF2-C15ORF63 Gene

Drugs & Compounds for SERF2-C15ORF63 Gene

No Compound Related Data Available

Transcripts for SERF2-C15ORF63 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SERF2-C15ORF63 Gene

No ASD Table

Relevant External Links for SERF2-C15ORF63 Gene

GeneLoc Exon Structure for
SERF2-C15ORF63

No data available for mRNA/cDNA for SERF2-C15ORF63 Gene

Expression for SERF2-C15ORF63 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SERF2-C15ORF63 Gene

genes like me logo Genes that share expression patterns with SERF2-C15ORF63: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SERF2-C15ORF63 Gene

Orthologs for SERF2-C15ORF63 Gene

No data available for Orthologs and Evolution for SERF2-C15ORF63 Gene

Paralogs for SERF2-C15ORF63 Gene

No data available for Paralogs for SERF2-C15ORF63 Gene

Variants for SERF2-C15ORF63 Gene

Sequence variations from dbSNP and Humsavar for SERF2-C15ORF63 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000068099 -- 43,802,476(+) C/T non_coding_transcript_variant
rs1000288190 -- 43,802,217(+) G/A/C non_coding_transcript_variant
rs1000304083 -- 43,796,488(+) T/G intron_variant
rs1001688292 -- 43,793,408(+) G/T intron_variant
rs1001725480 -- 43,791,127(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SERF2-C15ORF63 Gene

Variant ID Type Subtype PubMed ID
esv2760028 CNV gain+loss 17122850
nsv1036318 CNV gain 25217958
nsv1050263 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for SERF2-C15ORF63 Gene

Disorders for SERF2-C15ORF63 Gene

Additional Disease Information for SERF2-C15ORF63

No disorders were found for SERF2-C15ORF63 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SERF2-C15ORF63 Gene

Publications for SERF2-C15ORF63 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T … Taylor TD (PloS one 2010) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for SERF2-C15ORF63 Gene

Sources for SERF2-C15ORF63 Gene

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