SEPTIN9-DT Gene (RNA Gene)

SEPTIN9 Divergent Transcript

GC17M077261
GIFtS:
9
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Aliases for SEPTIN9-DT Gene

Data sources for SEPTIN9-DT Gene:

Subcategory (RNA class) for SEPTIN9-DT Gene

lncRNA

Aliases for SEPTIN9-DT Gene

External Ids for SEPTIN9-DT Gene

Summaries for SEPTIN9-DT Gene

GeneCards Summary for SEPTIN9-DT Gene

SEPTIN9-DT (SEPTIN9 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SEPTIN9-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEPTIN9-DT Gene

Genomics for SEPTIN9-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SEPTIN9-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J077279 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.9 -2891 11 ZSCAN16 CHD2 ZBTB10 MXD4 SP1 CEBPA NR2C1 FOXA1 DEK IKZF1 SEPTIN9 SRSF2 ENSG00000267546 METTL23 ENSG00000272386 MFSD11 SEPTIN9-DT MN297512 TNRC6C
GH17J077277 Promoter/Enhancer 0.7 Ensembl ENCODE 0.7 +4.1 4096 0.8 RCOR1 HLF CHD2 ENSG00000200651 BIRC5 SEPTIN9 SEPTIN9-DT ENSG00000265121 SEC14L1
GH17J077269 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +11.8 11751 1.6 ZNF217 ZBTB7B ELF1 ZNF623 MBD2 CTBP1 SMARCE1 ZBTB33 DPF2 NCOA3 ENSG00000265121 SEPTIN9 SEPTIN9-DT lnc-SEPT9-1 LACAT1 SEC14L1
GH17J077298 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -18.5 -18502 5.2 FOXA2 SMAD4 SAP130 ETV4 RARA TEAD3 THRB RBM22 BCL6 JUND ENSG00000200651 MN297512 SEPTIN9 SEPTIN9-DT TNRC6C
GH17J077305 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 -25.1 -25057 2.1 MXD4 CEBPA KDM6A THAP11 ZNF511 SMAD4 SAP130 RXRA MIER3 ETV4 SEPTIN9 MN297512 SEPTIN9-DT TNRC6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEPTIN9-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SEPTIN9-DT Gene

Latest Assembly
chr17:77,257,647-77,281,897
(GRCh38/hg38)
Size:
24,251 bases
Orientation:
Minus strand

Previous Assembly
chr17:75,269,866-75,277,979
(GRCh37/hg19 by Entrez Gene)
Size:
8,114 bases
Orientation:
Minus strand

chr17:75,253,819-75,277,979
(GRCh37/hg19 by Ensembl)
Size:
24,161 bases
Orientation:
Minus strand

Genomic View for SEPTIN9-DT Gene

Genes around SEPTIN9-DT on UCSC Golden Path with GeneCards custom track
SEPTIN9-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
SEPTIN9-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPTIN9-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEPTIN9-DT Gene

Proteins for SEPTIN9-DT Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SEPTIN9-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPTIN9-DT Gene

Domains & Families for SEPTIN9-DT Gene

Gene Families for SEPTIN9-DT Gene

HGNC:
genes like me logo Genes that share domains with SEPTIN9-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEPTIN9-DT Gene

Function for SEPTIN9-DT Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPTIN9-DT Gene

Localization for SEPTIN9-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPTIN9-DT Gene

Pathways & Interactions for SEPTIN9-DT Gene

PathCards logo

SuperPathways for SEPTIN9-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEPTIN9-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SEPTIN9-DT Gene

Drugs & Compounds for SEPTIN9-DT Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SEPTIN9-DT Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SEPTIN9-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000145A68_9606 lncRNA 698 5

RefSeq: NR_136503,

Ensembl: ENST00000581153 (view in UCSC) ,

LncBook: HSALNT0245596,

LNCipedia: lnc-SRSF2-4:1,

NONCODE: NONHSAT056138.2,

URS00003F97D7_9606 lncRNA 749 4

Ensembl: ENST00000581657 (view in UCSC) ,

LncBook: HSALNT0245591,

LNCipedia: lnc-SRSF2-4:2,

NONCODE: NONHSAT056133.2,

URS0000274630_9606 lncRNA 550 3

Ensembl: ENST00000582422 (view in UCSC) ,

LNCipedia: lnc-SRSF2-4:4,

NONCODE: NONHSAT056134.2,

URS00008BB778_9606 lncRNA 292 2

LNCipedia: lnc-SRSF2-4:3,

NONCODE: NONHSAT056137.2,

URS0001BCDE82_9606 lncRNA 2197 1

LncBook: HSALNT0245592,

SEPTIN9-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SEPTIN9-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPTIN9-DT Gene

No ASD Table

Relevant External Links for SEPTIN9-DT Gene

GeneLoc Exon Structure for
SEPTIN9-DT

Expression for SEPTIN9-DT Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPTIN9-DT Gene

Orthologs for SEPTIN9-DT Gene

Evolution for SEPTIN9-DT Gene

ENSEMBL:
Gene Tree for SEPTIN9-DT (if available)
TreeFam:
Gene Tree for SEPTIN9-DT (if available)

No data available for Orthologs for SEPTIN9-DT Gene

Paralogs for SEPTIN9-DT Gene

No data available for Paralogs for SEPTIN9-DT Gene

Variants for SEPTIN9-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SEPTIN9-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for SEPTIN9-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPTIN9-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEPTIN9-DT Gene

Disorders for SEPTIN9-DT Gene

Additional Disease Information for SEPTIN9-DT

Open Targets Platform
Open Targets Platform

No disorders were found for SEPTIN9-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPTIN9-DT Gene

Publications for SEPTIN9-DT Gene

No publications were found for SEPTIN9-DT Gene.

No data available for Mastermind for SEPTIN9-DT Gene

Products for SEPTIN9-DT Gene

Sources for SEPTIN9-DT Gene