SEPTIN9-DT Gene (RNA Gene)

SEPTIN9 Divergent Transcript

GC17M077261
GIFtS:
9
See more...

Aliases for SEPTIN9-DT Gene

Subcategory (RNA class) for SEPTIN9-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SEPTIN9-DT Gene

  • SEPTIN9 Divergent Transcript 2 3 5
  • SEPTIN9-DT 2 5
  • NONHSAG022851.2 91
  • HSALNG0118918 164
  • Lnc-SRSF2-4 165

External Ids for SEPTIN9-DT Gene

Additional External Ids for SEPTIN9-DT Gene

Summaries for SEPTIN9-DT Gene

GeneCards Summary for SEPTIN9-DT Gene

SEPTIN9-DT (SEPTIN9 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SEPTIN9-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEPTIN9-DT Gene

Genomics for SEPTIN9-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SEPTIN9-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEPTIN9-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SEPTIN9-DT Gene

Genomic Locations for SEPTIN9-DT Gene
chr17:77,257,737-77,281,897
(GRCh38/hg38)
Size:
24,161 bases
Orientation:
Minus strand
chr17:75,253,819-75,277,979
(GRCh37/hg19)
Size:
24,161 bases
Orientation:
Minus strand

Genomic View for SEPTIN9-DT Gene

Genes around SEPTIN9-DT on UCSC Golden Path with GeneCards custom track
SEPTIN9-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SEPTIN9-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPTIN9-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEPTIN9-DT Gene

Proteins for SEPTIN9-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SEPTIN9-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPTIN9-DT Gene

Domains & Families for SEPTIN9-DT Gene

Gene Families for SEPTIN9-DT Gene

HGNC:
genes like me logo Genes that share domains with SEPTIN9-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEPTIN9-DT Gene

Function for SEPTIN9-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SEPTIN9-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPTIN9-DT Gene

Localization for SEPTIN9-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPTIN9-DT Gene

Pathways & Interactions for SEPTIN9-DT Gene

PathCards logo

SuperPathways for SEPTIN9-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEPTIN9-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SEPTIN9-DT Gene

Drugs & Compounds for SEPTIN9-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SEPTIN9-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SEPTIN9-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000145A68_9606 lncRNA 695 6

HGNC: 52818,

RefSeq: NR_136503,

Ensembl: ENST00000581153 (view in UCSC) , ENST00000632028 (view in UCSC) ,

LncBook: HSALNT0245596,

LNCipedia: lnc-SRSF2-4:1,

NONCODE: NONHSAT056138.2,

URS00003F97D7_9606 lncRNA 749 4

Ensembl: ENST00000581657 (view in UCSC) , ENST00000632813 (view in UCSC) ,

LncBook: HSALNT0245591,

LNCipedia: lnc-SRSF2-4:2,

NONCODE: NONHSAT056133.2,

URS0000274630_9606 lncRNA 550 3

Ensembl: ENST00000582422 (view in UCSC) , ENST00000634135 (view in UCSC) ,

LNCipedia: lnc-SRSF2-4:4,

NONCODE: NONHSAT056134.2,

URS00008BB778_9606 lncRNA 292 2

LNCipedia: lnc-SRSF2-4:3,

NONCODE: NONHSAT056137.2,

SEPTIN9-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SEPTIN9-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPTIN9-DT Gene

No ASD Table

Relevant External Links for SEPTIN9-DT Gene

GeneLoc Exon Structure for
SEPTIN9-DT

Expression for SEPTIN9-DT Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPTIN9-DT Gene

Orthologs for SEPTIN9-DT Gene

Evolution for SEPTIN9-DT Gene

ENSEMBL:
Gene Tree for SEPTIN9-DT (if available)
TreeFam:
Gene Tree for SEPTIN9-DT (if available)

No data available for Orthologs for SEPTIN9-DT Gene

Paralogs for SEPTIN9-DT Gene

No data available for Paralogs for SEPTIN9-DT Gene

Variants for SEPTIN9-DT Gene

Additional dbSNP identifiers (rs#s) for SEPTIN9-DT Gene

Additional Variant Information for SEPTIN9-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPTIN9-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEPTIN9-DT Gene

Disorders for SEPTIN9-DT Gene

Additional Disease Information for SEPTIN9-DT

Open Targets Platform

No disorders were found for SEPTIN9-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPTIN9-DT Gene

Publications for SEPTIN9-DT Gene

No publications were found for SEPTIN9-DT Gene.

No data available for Mastermind for SEPTIN9-DT Gene

Products for SEPTIN9-DT Gene

Sources for SEPTIN9-DT Gene