SEPTIN9-DT Gene (RNA Gene)

SEPTIN9 Divergent Transcript

GC17M077261
GIFtS:
9

Aliases for SEPTIN9-DT Gene

Subcategory (RNA class) for SEPTIN9-DT Gene

lncRNA

Quality Score for this RNA gene is

16

Aliases for SEPTIN9-DT Gene

  • SEPTIN9 Divergent Transcript 2 3
  • Novel Transcript 5
  • NONHSAG022851 94
  • HSALNG0118918 169
  • Lnc-SRSF2-4 170
  • AC068594.1 5

External Ids for SEPTIN9-DT Gene

Additional External Ids for SEPTIN9-DT Gene

Summaries for SEPTIN9-DT Gene

GeneCards Summary for SEPTIN9-DT Gene

SEPTIN9-DT (SEPTIN9 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SEPTIN9-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEPTIN9-DT Gene

Genomics for SEPTIN9-DT Gene

GeneHancer (GH) Regulatory Elements for SEPTIN9-DT Gene

Promoters and enhancers for SEPTIN9-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEPTIN9-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEPTIN9-DT Gene

Genomic Locations for SEPTIN9-DT Gene
chr17:77,257,737-77,282,699
(GRCh38/hg38)
Size:
24,963 bases
Orientation:
Minus strand
chr17:75,253,819-75,277,979
(GRCh37/hg19)
Size:
24,161 bases
Orientation:
Minus strand

Genomic View for SEPTIN9-DT Gene

Genes around SEPTIN9-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPTIN9-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPTIN9-DT Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEPTIN9-DT Gene

Proteins for SEPTIN9-DT Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SEPTIN9-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPTIN9-DT Gene

Domains & Families for SEPTIN9-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEPTIN9-DT Gene

Function for SEPTIN9-DT Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SEPTIN9-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPTIN9-DT Gene

Localization for SEPTIN9-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPTIN9-DT Gene

Pathways & Interactions for SEPTIN9-DT Gene

PathCards logo

SuperPathways for SEPTIN9-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEPTIN9-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEPTIN9-DT Gene

Drugs & Compounds for SEPTIN9-DT Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SEPTIN9-DT Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SEPTIN9-DT Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) NONCODE transcripts :
(4) RNACentral transcripts :
(2) LncBook transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPTIN9-DT Gene

No ASD Table

Relevant External Links for SEPTIN9-DT Gene

GeneLoc Exon Structure for
SEPTIN9-DT
ECgene alternative splicing isoforms for
SEPTIN9-DT

Expression for SEPTIN9-DT Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPTIN9-DT Gene

Orthologs for SEPTIN9-DT Gene

Evolution for SEPTIN9-DT Gene

ENSEMBL:
Gene Tree for SEPTIN9-DT (if available)
TreeFam:
Gene Tree for SEPTIN9-DT (if available)

No data available for Orthologs for SEPTIN9-DT Gene

Paralogs for SEPTIN9-DT Gene

No data available for Paralogs for SEPTIN9-DT Gene

Variants for SEPTIN9-DT Gene

Sequence variations from dbSNP and Humsavar for SEPTIN9-DT Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000167596 -- 77,282,815(-) C/T upstream_transcript_variant
rs1000331285 -- 77,277,699(-) G/C intron_variant
rs1000766530 -- 77,282,013(-) G/T upstream_transcript_variant
rs1000849044 -- 77,277,326(-) A/G intron_variant
rs1001404156 -- 77,275,224(-) C/T intron_variant

Additional Variant Information for SEPTIN9-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPTIN9-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEPTIN9-DT Gene

Disorders for SEPTIN9-DT Gene

No disorders were found for SEPTIN9-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SEPTIN9-DT Gene

Publications for SEPTIN9-DT Gene

No publications were found for SEPTIN9-DT Gene.

No data available for External Links for SEPTIN9-DT Gene

Products for SEPTIN9-DT Gene

Sources for SEPTIN9-DT Gene