SEPTIN4-AS1 Gene (RNA Gene)

SEPTIN4 Antisense RNA 1

GC17P058520
GIFtS:
10
See more...

Aliases for SEPTIN4-AS1 Gene

Subcategory (RNA class) for SEPTIN4-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for SEPTIN4-AS1 Gene

  • SEPTIN4 Antisense RNA 1 2 3 5
  • SEPT4 Antisense RNA 1 2 3
  • SEPTIN4-AS1 2 5
  • NONHSAG022335.2 91
  • HSALNG0117721 164
  • Lnc-RAD51C-5 165
  • SEPT4-AS1 3

External Ids for SEPTIN4-AS1 Gene

Previous HGNC Symbols for SEPTIN4-AS1 Gene

  • SEPT4-AS1

Summaries for SEPTIN4-AS1 Gene

GeneCards Summary for SEPTIN4-AS1 Gene

SEPTIN4-AS1 (SEPTIN4 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for SEPTIN4-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEPTIN4-AS1 Gene

Genomics for SEPTIN4-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SEPTIN4-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH17J058524 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE dbSUPER 600.4 +8.8 8760 5.7 ARID3A YBX1 ZIC2 ZSCAN4 SP1 CEBPA CTCF CEBPB NR2F2 ZFHX2 SEPTIN4-AS1 SEPTIN4 TRIM37 RAD51C RNF43 TEX14 lnc-C17orf47-1 MTMR4 lnc-C17orf47-2
GH17J058511 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.6 -2567 8.9 SP1 HNRNPL CREB1 GATAD2A CTCF ZBTB33 YBX1 PRDM10 ZNF629 TFE3 MTMR4 TRIM37 RAD51C VEZF1 HSF5 SEPTIN4 SMG8 SRSF1 MKS1 SUPT4H1
GH17J058531 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.5 15466 6.5 GATAD2A PRDM10 TFE3 RCOR2 ZNF7 JUND LARP7 RXRB REST IRF2 SEPTIN4 TRIM37 RNF43 lnc-C17orf47-1 lnc-C17orf47-2 MTMR4 SEPTIN4-AS1
GH17J058520 Enhancer 0.8 ENCODE dbSUPER 0.7 +2.2 2232 0.2 CREB1 CTCF IRF2 GABPA SMARCA5 ZBTB26 ZNF444 SMC3 TFDP1 SAP130 TRIM37 MTMR4 SEPTIN4-AS1 lnc-C17orf47-1 SEPTIN4
GH17J058522 Enhancer 0.5 FANTOM5 dbSUPER 0.7 +3.9 3938 0.1 NBN SEPTIN4 OR4D2 DYNLL2 MTMR4 SEPTIN4-AS1 lnc-C17orf47-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEPTIN4-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SEPTIN4-AS1 Gene

Genomic Locations for SEPTIN4-AS1 Gene
chr17:58,518,783-58,557,799
(GRCh38/hg38)
Size:
39,017 bases
Orientation:
Plus strand
chr17:56,597,198-56,634,338
(GRCh37/hg19)
Size:
37,141 bases
Orientation:
Plus strand

Genomic View for SEPTIN4-AS1 Gene

Genes around SEPTIN4-AS1 on UCSC Golden Path with GeneCards custom track
SEPTIN4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
SEPTIN4-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPTIN4-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEPTIN4-AS1 Gene

Proteins for SEPTIN4-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SEPTIN4-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPTIN4-AS1 Gene

Domains & Families for SEPTIN4-AS1 Gene

Gene Families for SEPTIN4-AS1 Gene

HGNC:
genes like me logo Genes that share domains with SEPTIN4-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEPTIN4-AS1 Gene

Function for SEPTIN4-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SEPTIN4-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPTIN4-AS1 Gene

Localization for SEPTIN4-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPTIN4-AS1 Gene

Pathways & Interactions for SEPTIN4-AS1 Gene

PathCards logo

SuperPathways for SEPTIN4-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEPTIN4-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SEPTIN4-AS1 Gene

Drugs & Compounds for SEPTIN4-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SEPTIN4-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for SEPTIN4-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000015693D_9606 lncRNA 653 5

HGNC: 51345,

RefSeq: NR_110810,

Ensembl: ENST00000580589 (view in UCSC) ,

LncBook: HSALNT0243183,

NONCODE: NONHSAT054964.2,

URS00001B8526_9606 lncRNA 1000 2

Ensembl: ENST00000580769 (view in UCSC) ,

NONCODE: NONHSAT054968.2,

URS0000EEC271_9606 lncRNA 1627 1

Ensembl: ENST00000578022 (view in UCSC) ,

URS00002134C9_9606 lncRNA 725 2

LncBook: HSALNT0243189,

NONCODE: NONHSAT054967.2,

URS0000D5CFD3_9606 lncRNA 1380 1

LNCipedia: lnc-RAD51C-5:1,

SEPTIN4-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for SEPTIN4-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for SEPTIN4-AS1 Gene

No ASD Table

Relevant External Links for SEPTIN4-AS1 Gene

GeneLoc Exon Structure for
SEPTIN4-AS1

Expression for SEPTIN4-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPTIN4-AS1 Gene

Orthologs for SEPTIN4-AS1 Gene

Evolution for SEPTIN4-AS1 Gene

ENSEMBL:
Gene Tree for SEPTIN4-AS1 (if available)
TreeFam:
Gene Tree for SEPTIN4-AS1 (if available)

No data available for Orthologs for SEPTIN4-AS1 Gene

Paralogs for SEPTIN4-AS1 Gene

No data available for Paralogs for SEPTIN4-AS1 Gene

Variants for SEPTIN4-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SEPTIN4-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
740880 Likely Benign: not provided 58,525,714(+) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
778530 Benign: not provided 58,520,745(+) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT,THREE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for SEPTIN4-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SEPTIN4-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3640886 CNV loss 21293372
esv3640887 CNV loss 21293372
esv3640888 CNV loss 21293372

Additional Variant Information for SEPTIN4-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPTIN4-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEPTIN4-AS1 Gene

Disorders for SEPTIN4-AS1 Gene

Additional Disease Information for SEPTIN4-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for SEPTIN4-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEPTIN4-AS1 Gene

Publications for SEPTIN4-AS1 Gene

  1. Identification of nine new susceptibility loci for testicular cancer, including variants near DAZL and PRDM14. (PMID: 23666240) Ruark E … Turnbull C (Nature genetics 2013) 3
  2. Meta-analysis identifies four new loci associated with testicular germ cell tumor. (PMID: 23666239) Chung CC … Nathanson KL (Nature genetics 2013) 3
  3. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim AM … Laurie GW (Investigative ophthalmology & visual science 2005) 3

No data available for Mastermind for SEPTIN4-AS1 Gene

Products for SEPTIN4-AS1 Gene

Sources for SEPTIN4-AS1 Gene