Aliases for SEPHS1P6 Gene

Aliases for SEPHS1P6 Gene

  • Selenophosphate Synthetase 1 Pseudogene 6 2 3 5

External Ids for SEPHS1P6 Gene

Previous GeneCards Identifiers for SEPHS1P6 Gene

  • GC02P200526

Summaries for SEPHS1P6 Gene

GeneCards Summary for SEPHS1P6 Gene

SEPHS1P6 (Selenophosphate Synthetase 1 Pseudogene 6) is a Pseudogene.

Additional gene information for SEPHS1P6 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEPHS1P6 Gene

Genomics for SEPHS1P6 Gene

GeneHancer (GH) Regulatory Elements for SEPHS1P6 Gene

Promoters and enhancers for SEPHS1P6 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J199659 Promoter 1.2 Ensembl CraniofacialAtlas 500.7 -0.1 -112 1.1 HDAC2 ZNF341 POLR2G E2F6 ZNF213 TFDP1 VEZF1 JUND SMARCA4 CCNT2 SEPHS1P6 SPATS2L lnc-SATB2-5 LINC01877
GH02J199715 Enhancer 0.6 Ensembl 4.4 +57.4 57449 2 TCF12 NCOR1 NFIC MAFF MAFK EHMT2 KDM1A MEIS2 NFIA ZNF384 FTCDNL1 SEPHS1P6 piR-61514-100 lnc-C2orf69-11 LINC01877 lnc-FTCDNL1-1
GH02J199629 Enhancer 0.3 Ensembl 0.3 -30.1 -30050 0.6 ZNF18 TCF7L2 lnc-SATB2-5 LINC01877 SEPHS1P6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEPHS1P6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEPHS1P6 Gene

Genomic Locations for SEPHS1P6 Gene
chr2:199,659,551-199,660,729
(GRCh38/hg38)
Size:
1,179 bases
Orientation:
Plus strand
chr2:200,524,274-200,525,452
(GRCh37/hg19)
Size:
1,179 bases
Orientation:
Plus strand

Genomic View for SEPHS1P6 Gene

Genes around SEPHS1P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEPHS1P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEPHS1P6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEPHS1P6 Gene

Proteins for SEPHS1P6 Gene

Post-translational modifications for SEPHS1P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEPHS1P6 Gene

Domains & Families for SEPHS1P6 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEPHS1P6 Gene

Function for SEPHS1P6 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEPHS1P6 Gene

Localization for SEPHS1P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEPHS1P6 Gene

Pathways & Interactions for SEPHS1P6 Gene

PathCards logo

SuperPathways for SEPHS1P6 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for SEPHS1P6 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SEPHS1P6 Gene

Drugs & Compounds for SEPHS1P6 Gene

No Compound Related Data Available

Transcripts for SEPHS1P6 Gene

mRNA/cDNA for SEPHS1P6 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEPHS1P6 Gene

No ASD Table

Relevant External Links for SEPHS1P6 Gene

GeneLoc Exon Structure for
SEPHS1P6

Expression for SEPHS1P6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SEPHS1P6 Gene

mRNA differential expression in normal tissues according to GTEx for SEPHS1P6 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.9), Brain - Frontal Cortex (BA9) (x5.8), Brain - Putamen (basal ganglia) (x5.1), Brain - Cortex (x4.5), Brain - Caudate (basal ganglia) (x4.5), and Brain - Anterior cingulate cortex (BA24) (x4.5).
genes like me logo Genes that share expression patterns with SEPHS1P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEPHS1P6 Gene

Orthologs for SEPHS1P6 Gene

Evolution for SEPHS1P6 Gene

ENSEMBL:
Gene Tree for SEPHS1P6 (if available)
TreeFam:
Gene Tree for SEPHS1P6 (if available)

No data available for Orthologs for SEPHS1P6 Gene

Paralogs for SEPHS1P6 Gene

No data available for Paralogs for SEPHS1P6 Gene

Variants for SEPHS1P6 Gene

Additional Variant Information for SEPHS1P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEPHS1P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEPHS1P6 Gene

Disorders for SEPHS1P6 Gene

No disorders were found for SEPHS1P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SEPHS1P6 Gene

Publications for SEPHS1P6 Gene

No publications were found for SEPHS1P6 Gene.

No data available for Mastermind for SEPHS1P6 Gene

Products for SEPHS1P6 Gene

Sources for SEPHS1P6 Gene