Aliases for SEC22B3P Gene

Aliases for SEC22B3P Gene

  • SEC22 Homolog B3, Pseudogene 2 3
  • SEC22 Homolog B3 2 3
  • Vesicle-Trafficking Protein SEC22b 3
  • SEC22B3 3

External Ids for SEC22B3P Gene

Previous HGNC Symbols for SEC22B3P Gene

  • SEC22B3

Summaries for SEC22B3P Gene

GeneCards Summary for SEC22B3P Gene

SEC22B3P (SEC22 Homolog B3, Pseudogene) is a Pseudogene.

Additional gene information for SEC22B3P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEC22B3P Gene

Genomics for SEC22B3P Gene

GeneHancer (GH) Regulatory Elements for SEC22B3P Gene

Promoters and enhancers for SEC22B3P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J148789 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 750.6 +0.7 733 3.4 RBPJ SMARCE1 CTBP1 ELF1 SP1 ELF3 MAFK MLLT1 SP7 ZSCAN21 SEC22B3P ENSG00000227733 ENSG00000227700 lnc-NBPF14-1
GH01J148793 Enhancer 1.1 FANTOM5 ENCODE 0.6 -2.1 -2144 1.3 ZNF785 SMARCE1 CC2D1A ZKSCAN8 BACH1 ZNF639 TRIM24 DPF2 CAVIN1 RFX1 ENSG00000271546 lnc-PDE4DIP-5 GPR89B PDE4DIP ENSG00000225871 ENSG00000227700 ENSG00000227733 SEC22B3P
GH01J148771 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +17.9 17863 4.7 FOXK2 FOXA1 POLR2A RAD21 POU5F1 HDGF CSDE1 SP1 ZNF384 MAFK lnc-NUDT4B-9 GPR89B PDE4DIP ENSG00000225871 HSALNG0006673-002 lnc-NBPF14-1 ENSG00000275140 SEC22B3P
GH01J148795 Enhancer 0.5 ENCODE 0.6 -3.8 -3819 1.1 ZIC2 ZNF692 ZNF561 ZFX MEF2D ZFP69B ZNF335 PRDM6 CBX8 ENSG00000271546 lnc-PDE4DIP-5 SEC22B3P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEC22B3P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEC22B3P Gene

Genomic Locations for SEC22B3P Gene
chr1:148,767,753-148,791,814
(GRCh38/hg38)
Size:
24,062 bases
Orientation:
Minus strand

Genomic View for SEC22B3P Gene

Genes around SEC22B3P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC22B3P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC22B3P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC22B3P Gene

Proteins for SEC22B3P Gene

Post-translational modifications for SEC22B3P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC22B3P Gene

Domains & Families for SEC22B3P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEC22B3P Gene

Function for SEC22B3P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC22B3P Gene

Localization for SEC22B3P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEC22B3P Gene

Pathways & Interactions for SEC22B3P Gene

PathCards logo

SuperPathways for SEC22B3P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEC22B3P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC22B3P Gene

Drugs & Compounds for SEC22B3P Gene

No Compound Related Data Available

Transcripts for SEC22B3P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SEC22B3P Gene

No ASD Table

Relevant External Links for SEC22B3P Gene

GeneLoc Exon Structure for
SEC22B3P
ECgene alternative splicing isoforms for
SEC22B3P

No data available for mRNA/cDNA for SEC22B3P Gene

Expression for SEC22B3P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC22B3P Gene

Orthologs for SEC22B3P Gene

No data available for Orthologs and Evolution for SEC22B3P Gene

Paralogs for SEC22B3P Gene

No data available for Paralogs for SEC22B3P Gene

Variants for SEC22B3P Gene

Sequence variations from dbSNP and Humsavar for SEC22B3P Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs10399653 -- 148,786,146(-) T/G intron_variant
rs1048016 -- 148,772,269(-) G/A non_coding_transcript_variant
rs10611288 -- 148,776,925(-) TTATT/TT intron_variant
rs10752807 -- 148,773,420(-) C/T intron_variant
rs10752808 -- 148,766,628(-) C/T non_coding_transcript_variant

Additional Variant Information for SEC22B3P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC22B3P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEC22B3P Gene

Disorders for SEC22B3P Gene

No disorders were found for SEC22B3P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SEC22B3P Gene

Publications for SEC22B3P Gene

No publications were found for SEC22B3P Gene.

Products for SEC22B3P Gene

Sources for SEC22B3P Gene