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Aliases for SEC22B2 Gene

Aliases for SEC22B2 Gene

  • SEC22 Homolog B2 2 3 5
  • Vesicle-Trafficking Protein SEC22b 3
  • CH17-189H20.1 3

External Ids for SEC22B2 Gene

Summaries for SEC22B2 Gene

GeneCards Summary for SEC22B2 Gene

SEC22B2 (SEC22 Homolog B2) is a Pseudogene.

Additional gene information for SEC22B2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC22B2 Gene

Genomics for SEC22B2 Gene

GeneHancer (GH) Regulatory Elements for SEC22B2 Gene

Promoters and enhancers for SEC22B2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J149343 Enhancer 0.2 Ensembl 0.7 +5.0 4971 0.8 SEC22B2 LOC105371403
GH01J149329 Enhancer 0.2 Ensembl 0.4 -8.6 -8637 0.4 ENSG00000215861 SEC22B2
GH01J149347 Enhancer 0.2 Ensembl 0.4 +9.9 9863 1.8 SEC22B2 LOC105371403
GH01J149350 Enhancer 0.2 Ensembl 0.4 +13.4 13363 2 SEC22B2 LOC105371403
GH01J149354 Enhancer 0.2 Ensembl 0.3 +25.8 25763 22.4 LOC105371403 SEC22B2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEC22B2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEC22B2 Gene

Genomic Locations for SEC22B2 Gene
chr1:149,338,438-149,362,499
(GRCh38/hg38)
Size:
24,062 bases
Orientation:
Plus strand

Genomic View for SEC22B2 Gene

Genes around SEC22B2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC22B2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC22B2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC22B2 Gene

Proteins for SEC22B2 Gene

Post-translational modifications for SEC22B2 Gene

No Post-translational modifications

Other Protein References for SEC22B2 Gene

No data available for DME Specific Peptides for SEC22B2 Gene

Domains & Families for SEC22B2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC22B2 Gene

Function for SEC22B2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC22B2 Gene

Localization for SEC22B2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEC22B2 Gene

Pathways & Interactions for SEC22B2 Gene

PathCards logo

SuperPathways for SEC22B2 Gene

No Data Available

Interacting Proteins for SEC22B2 Gene

Gene Ontology (GO) - Biological Process for SEC22B2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC22B2 Gene

Drugs & Compounds for SEC22B2 Gene

No Compound Related Data Available

Transcripts for SEC22B2 Gene

mRNA/cDNA for SEC22B2 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SEC22B2 Gene

No ASD Table

Relevant External Links for SEC22B2 Gene

GeneLoc Exon Structure for
SEC22B2
ECgene alternative splicing isoforms for
SEC22B2

Expression for SEC22B2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC22B2 Gene

Orthologs for SEC22B2 Gene

Evolution for SEC22B2 Gene

ENSEMBL:
Gene Tree for SEC22B2 (if available)
TreeFam:
Gene Tree for SEC22B2 (if available)

No data available for Orthologs for SEC22B2 Gene

Paralogs for SEC22B2 Gene

No data available for Paralogs for SEC22B2 Gene

Variants for SEC22B2 Gene

Sequence variations from dbSNP and Humsavar for SEC22B2 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs10399675 -- 149,343,633(+) T/C genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1065561 -- 149,175,513(+) C/A upstream_transcript_variant
rs10910675 -- 149,202,278(+) A/G genic_upstream_transcript_variant, intron_variant
rs10910683 -- 149,218,553(+) G/A genic_upstream_transcript_variant, intron_variant
rs10910699 -- 149,269,976(+) C/T genic_upstream_transcript_variant, intron_variant

Additional Variant Information for SEC22B2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC22B2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SEC22B2 Gene

Disorders for SEC22B2 Gene

No disorders were found for SEC22B2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SEC22B2 Gene

Publications for SEC22B2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SEC22B2 Gene

Sources for SEC22B2 Gene

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