SEC1P Gene (Pseudogene)

Secretory Blood Group 1, Pseudogene

GC19P048638
GIFtS:
11
See more...

Aliases for SEC1P Gene

Aliases for SEC1P Gene

  • Secretory Blood Group 1, Pseudogene 2 3 5
  • Alpha(1,2) Fucosyltransferase Pseudogene 3
  • SEC1P 5
  • SEC1 3

External Ids for SEC1P Gene

Previous GeneCards Identifiers for SEC1P Gene

  • GC19P049146

Summaries for SEC1P Gene

GeneCards Summary for SEC1P Gene

SEC1P (Secretory Blood Group 1, Pseudogene) is a Pseudogene.

Additional gene information for SEC1P Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEC1P Gene

Genomics for SEC1P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SEC1P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEC1P on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SEC1P Gene

Latest Assembly
chr19:48,638,039-48,682,245
(GRCh38/hg38)
Size:
44,207 bases
Orientation:
Plus strand

Previous Assembly
chr19:49,141,296-49,185,502
(GRCh37/hg19 by Entrez Gene)
Size:
44,207 bases
Orientation:
Plus strand

chr19:49,141,328-49,184,461
(GRCh37/hg19 by Ensembl)
Size:
43,134 bases
Orientation:
Plus strand

Genomic View for SEC1P Gene

Genes around SEC1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC1P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEC1P Gene

Proteins for SEC1P Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SEC1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC1P Gene

Domains & Families for SEC1P Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SEC1P Gene

Function for SEC1P Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SEC1P Gene

genes like me logo Genes that share phenotypes with SEC1P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC1P Gene

Localization for SEC1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEC1P Gene

Pathways & Interactions for SEC1P Gene

PathCards logo

SuperPathways for SEC1P Gene

No Data Available

Gene Ontology (GO) - Biological Process for SEC1P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SEC1P Gene

Drugs & Compounds for SEC1P Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SEC1P Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for SEC1P Gene

6 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SEC1P Gene

No ASD Table

Relevant External Links for SEC1P Gene

GeneLoc Exon Structure for
SEC1P

Expression for SEC1P Gene

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  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SEC1P Gene

mRNA expression in normal human tissues for SEC1P Gene
mRNA expression by GTEx for SEC1P Gene

mRNA differential expression in normal tissues according to GTEx for SEC1P Gene

This gene is overexpressed in Testis (x14.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SEC1P

SOURCE GeneReport for Unigene cluster for SEC1P Gene:

Hs.443160
genes like me logo Genes that share expression patterns with SEC1P: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC1P Gene

Orthologs for SEC1P Gene

Evolution for SEC1P Gene

ENSEMBL:
Gene Tree for SEC1P (if available)
TreeFam:
Gene Tree for SEC1P (if available)

No data available for Orthologs for SEC1P Gene

Paralogs for SEC1P Gene

No data available for Paralogs for SEC1P Gene

Variants for SEC1P Gene

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  1. SNP Genotyping and Copy Number Assays for research

Structural Variations from Database of Genomic Variants (DGV) for SEC1P Gene

Variant ID Type Subtype PubMed ID
dgv3617n100 CNV gain 25217958
esv2664951 CNV deletion 23128226
esv2718679 CNV deletion 23290073
esv2718680 CNV deletion 23290073
esv2718681 CNV deletion 23290073
esv3644596 CNV loss 21293372
nsv458719 CNV loss 19166990
nsv521477 CNV loss 19592680
nsv579904 CNV loss 21841781
nsv954676 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SEC1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC1P

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance and Variation tolerance for SEC1P Gene

Disorders for SEC1P Gene

Additional Disease Information for SEC1P

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SEC1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEC1P Gene

Publications for SEC1P Gene

  1. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. (PMID: 24941225) Liang Y … Peng T (PloS one 2014) 3
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3
  3. Sec1-FUT2-Sec1 hybrid allele generated by interlocus gene conversion. (PMID: 18067503) Soejima M … Koda Y (Transfusion 2008) 3
  4. Evolution of alpha 2-fucosyltransferase genes in primates: relation between an intronic Alu-Y element and red cell expression of ABH antigens. (PMID: 10723735) Apoil PA … Blancher A (Molecular biology and evolution 2000) 3
  5. Structure and expression of the gene encoding secretor-type galactoside 2-alpha-L-fucosyltransferase (FUT2). (PMID: 9219535) Koda Y … Kimura H (European journal of biochemistry 1997) 3

ExternalLinks

View latest publications for SEC1P gene in Mastermind

Products for SEC1P Gene

Sources for SEC1P Gene