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SEC1P Gene(Pseudogene)

Secretory Blood Group 1, Pseudogene

GCID:
GC19P048638
GIFtS:
16
Genes Participants
UDN Logo

Aliases for SEC1P Gene

Aliases for SEC1P Gene

  • Secretory Blood Group 1, Pseudogene 2 3 5
  • Alpha(1,2) Fucosyltransferase Pseudogene 3
  • SEC1 3

External Ids for SEC1P Gene

Previous GeneCards Identifiers for SEC1P Gene

  • GC19P049146

Summaries for SEC1P Gene

GeneCards Summary for SEC1P Gene

SEC1P (Secretory Blood Group 1, Pseudogene) is a Pseudogene.

Additional gene information for SEC1P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SEC1P Gene

Genomics for SEC1P Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SEC1P Gene

Promoters and enhancers for SEC1P Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19I048632 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 565.9 -1.6 -1562 7.8 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 SP3 SEC1P DBP PRR12 SNRNP70 GRWD1 PIH1D1 ENSG00000268093 SNORD35A RPS11 NOP53-AS1
GH19I048958 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14 +326.0 325990 10.2 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 FTL ENSG00000267898 GC19P048966 GC19P048967 NUP62 PTOV1-AS2 IRF3 PRR12 SNORD35A SNORD35B
GH19I048612 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 15.1 -21.3 -21277 7.8 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 RPL18 FAM83E PIR55128 SPHK2 PRR12 PIH1D1 SNORD35A SNORD35B ALDH16A1 KDELR1
GH19I049154 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 13.9 +518.7 518724 5.1 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B TRPM4 HRC PRR12 SEC1P GRWD1 RPS11 SNORD35A RPL13A PIH1D1 RPL18
GH19I048622 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 15.1 -13.6 -13616 4 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A YY1 ETS1 TCF12 GLIS2 ENSG00000268093 SPHK2 SEC1P CYTH2 SNORD35A NOP53-AS1 GRWD1 SNORD35B PRR12 KDELR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SEC1P on UCSC Golden Path with GeneCards custom track

Genomic Locations for SEC1P Gene

Genomic Locations for SEC1P Gene
chr19:48,638,039-48,682,245
(GRCh38/hg38)
Size:
44,207 bases
Orientation:
Plus strand
chr19:49,141,296-49,185,502
(GRCh37/hg19)

Genomic View for SEC1P Gene

Genes around SEC1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC1P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SEC1P Gene

Proteins for SEC1P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SEC1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SEC1P Gene

Domains & Families for SEC1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SEC1P Gene

Function for SEC1P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for SEC1P Gene

Phenotypes for SEC1P Gene

GenomeRNAi human phenotypes for SEC1P:
genes like me logo Genes that share phenotypes with SEC1P: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SEC1P Gene

Localization for SEC1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SEC1P Gene

Pathways & Interactions for SEC1P Gene

SuperPathways for SEC1P Gene

PathCards logo More details on SuperPathways for SEC1P
No Data Available

Interacting Proteins for SEC1P Gene

Gene Ontology (GO) - Biological Process for SEC1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SEC1P Gene

Drugs & Compounds for SEC1P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SEC1P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SEC1P Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SEC1P Gene

Secretory blood group 1, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SEC1P Gene

No ASD Table

Relevant External Links for SEC1P Gene

GeneLoc Exon Structure for
SEC1P
ECgene alternative splicing isoforms for
SEC1P

Expression for SEC1P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SEC1P Gene

mRNA expression in normal human tissues for SEC1P Gene
mRNA expression by GTEx for SEC1P Gene

mRNA differential expression in normal tissues according to GTEx for SEC1P Gene

This gene is overexpressed in Testis (x14.6).

NURSA nuclear receptor signaling pathways regulating expression of SEC1P Gene:

SEC1P

SOURCE GeneReport for Unigene cluster for SEC1P Gene:

Hs.443160
genes like me logo Genes that share expression patterns with SEC1P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC1P Gene

Orthologs for SEC1P Gene

Evolution for SEC1P Gene

ENSEMBL:
Gene Tree for SEC1P (if available)
TreeFam:
Gene Tree for SEC1P (if available)

No data available for Orthologs for SEC1P Gene

Paralogs for SEC1P Gene

No data available for Paralogs for SEC1P Gene

Variants for SEC1P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for SEC1P Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000063861 -- 48,665,096(+) G/T intron_variant
rs1000188827 -- 48,636,088(+) G/T upstream_transcript_variant
rs1000296980 -- 48,644,083(+) G/T intron_variant
rs1000345943 -- 48,675,609(+) A/G intron_variant
rs1000364775 -- 48,641,437(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SEC1P Gene

Variant ID Type Subtype PubMed ID
dgv3617n100 CNV gain 25217958
esv2664951 CNV deletion 23128226
esv2718679 CNV deletion 23290073
esv2718680 CNV deletion 23290073
esv2718681 CNV deletion 23290073
esv3644596 CNV loss 21293372
nsv458719 CNV loss 19166990
nsv521477 CNV loss 19592680
nsv579904 CNV loss 21841781
nsv954676 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495

Additional Variant Information for SEC1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC1P

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SEC1P Gene

Disorders for SEC1P Gene

Additional Disease Information for SEC1P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SEC1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SEC1P Gene

Publications for SEC1P Gene

  1. Genetic variations affecting serum carcinoembryonic antigen levels and status of regional lymph nodes in patients with sporadic colorectal cancer from Southern China. (PMID: 24941225) Liang Y … Peng T (PloS one 2014) 3 58
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 58
  3. Sec1-FUT2-Sec1 hybrid allele generated by interlocus gene conversion. (PMID: 18067503) Soejima M … Koda Y (Transfusion 2008) 3 58
  4. Evolution of alpha 2-fucosyltransferase genes in primates: relation between an intronic Alu-Y element and red cell expression of ABH antigens. (PMID: 10723735) Apoil PA … Blancher A (Molecular biology and evolution 2000) 3 58
  5. Structure and expression of the gene encoding secretor-type galactoside 2-alpha-L-fucosyltransferase (FUT2). (PMID: 9219535) Koda Y … Kimura H (European journal of biochemistry 1997) 3 58

Products for SEC1P Gene

Sources for SEC1P Gene

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