Aliases for SEC11C Gene

Aliases for SEC11C Gene

  • SEC11 Homolog C, Signal Peptidase Complex Subunit 2 3 5
  • SPCS4C 2 3 4
  • SPC21 2 3 4
  • Signal Peptidase Complex Catalytic Subunit SEC11C 3 4
  • Microsomal Signal Peptidase 21 KDa Subunit 3 4
  • Signal Peptidase Complex 21 2 3
  • SEC11-Like Protein 3 3 4
  • SPase 21 KDa Subunit 3 4
  • SEC11L3 3 4
  • SEC11 Homolog C (S. Cerevisiae) 2
  • SEC11-Like 3 (S. Cerevisiae) 2
  • SEC11 Homolog C 4
  • SEC11-Like 3 3
  • EC 3.4.21.89 4
  • SEC11C 5

External Ids for SEC11C Gene

Previous HGNC Symbols for SEC11C Gene

  • SEC11L3

Previous GeneCards Identifiers for SEC11C Gene

  • GC18P054960
  • GC18P056807
  • GC18P053515

Summaries for SEC11C Gene

GeneCards Summary for SEC11C Gene

SEC11C (SEC11 Homolog C, Signal Peptidase Complex Subunit) is a Protein Coding gene. Diseases associated with SEC11C include Malignant Inflammatory Fibrous Histiocytoma. Among its related pathways are Incretin synthesis, secretion, and inactivation and Viral mRNA Translation. Gene Ontology (GO) annotations related to this gene include peptidase activity and serine-type peptidase activity. An important paralog of this gene is SEC11A.

UniProtKB/Swiss-Prot Summary for SEC11C Gene

  • Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SEC11C Gene

Genomics for SEC11C Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for SEC11C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J059138 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 261.8 +1.4 1426 4.7 BCLAF1 SP1 ZNF207 SIX5 SSRP1 JUND ZNF592 CEBPA ATF3 ZIC2 SEC11C NONHSAG023978.2 MALT1 ZNF532 GRP lnc-SEC11C-1
GH18J059123 Enhancer 0.8 Ensembl ENCODE 10.3 -15.9 -15912 1.3 JUND ZBTB48 ZNF189 BATF JUNB ZNF398 SP7 POLR2A TCF12 EP300 SEC11C HSALNG0121850 ZNF532
GH18J059084 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 -55.5 -55536 0.7 ZNF654 TRIM22 CTCF SIN3A THAP11 RAD21 RFX5 SMC3 ETV4 ETV1 HSALNG0121848 ENSG00000267215 HSALNG0121850 SEC11C ZNF532
GH18J059155 Enhancer 0.5 ENCODE 0.4 +15.5 15518 0.2 JUND MAFK BHLHE40 POLR2A NFE2L2 EP300 FOS CEBPB GRP lnc-SEC11C-1 SEC11C NONHSAG023978.2
GH18J059047 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.2 -88.1 -88055 7.6 ZNF580 JUND YY1 FEZF1 KLF7 ZNF610 FOXA2 RXRA ZBTB33 ZNF843 ENSG00000199713 piR-60246-080 lnc-ZNF532-2 lnc-SEC11C-4 HSALNG0121845 OACYLP SEC11C ZNF532
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SEC11C on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for SEC11C

Top Transcription factor binding sites by QIAGEN in the SEC11C gene promoter:
  • Egr-4
  • HSF1 (long)
  • HSF1short
  • HSF2
  • Pax-2
  • Pax-2a
  • Pax-4a
  • POU2F1
  • POU2F1a
  • SEF-1 (1)

Genomic Locations for SEC11C Gene

Latest Assembly
chr18:59,139,866-59,158,837
(GRCh38/hg38)
Size:
18,972 bases
Orientation:
Plus strand

Previous Assembly
chr18:56,807,116-56,826,064
(GRCh37/hg19 by Entrez Gene)
Size:
18,949 bases
Orientation:
Plus strand

chr18:56,806,709-56,826,068
(GRCh37/hg19 by Ensembl)
Size:
19,360 bases
Orientation:
Plus strand

Genomic View for SEC11C Gene

Genes around SEC11C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SEC11C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SEC11C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SEC11C Gene

Proteins for SEC11C Gene

  • Protein details for SEC11C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BY50-SC11C_HUMAN
    Recommended name:
    Signal peptidase complex catalytic subunit SEC11C
    Protein Accession:
    Q9BY50
    Secondary Accessions:
    • B2RAA3

    Protein attributes for SEC11C Gene

    Size:
    192 amino acids
    Molecular mass:
    21542 Da
    Quaternary structure:
    • Component of the microsomal signal peptidase complex which consists of five members: SEC11A, SEC11C, SPCS1, SPCS2 and SPCS3.

neXtProt entry for SEC11C Gene

Post-translational modifications for SEC11C Gene

  • Ubiquitination at Lys98, Lys122, Lys126, and Lys139
  • Modification sites at PhosphoSitePlus

Other Protein References for SEC11C Gene

No data available for DME Specific Peptides for SEC11C Gene

Domains & Families for SEC11C Gene

Gene Families for SEC11C Gene

Human Protein Atlas (HPA):
  • Enzymes
  • Predicted membrane proteins

Protein Domains for SEC11C Gene

InterPro:
Blocks:
  • Bacterial leader peptidase 1 (S26) family signature
  • Eukaryotic signal peptidase (S27) family signature

Suggested Antigen Peptide Sequences for SEC11C Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ57851, highly similar to Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-) (B4DI03_HUMAN)
  • SPC21 (SC11C_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9BY50

UniProtKB/Swiss-Prot:

SC11C_HUMAN :
  • Belongs to the peptidase S26B family.
Family:
  • Belongs to the peptidase S26B family.
genes like me logo Genes that share domains with SEC11C: view

Function for SEC11C Gene

Molecular function for SEC11C Gene

UniProtKB/Swiss-Prot Function:
Component of the microsomal signal peptidase complex which removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.; EC=3.4.21.89;.

Enzyme Numbers (IUBMB) for SEC11C Gene

Phenotypes From GWAS Catalog for SEC11C Gene

Gene Ontology (GO) - Molecular Function for SEC11C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004252 serine-type endopeptidase activity IEA --
GO:0005515 protein binding IPI 32296183
GO:0008233 peptidase activity IEA,IBA 21873635
GO:0008236 serine-type peptidase activity IEA --
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with SEC11C: view
genes like me logo Genes that share phenotypes with SEC11C: view

Animal Models for SEC11C Gene

MGI Knock Outs for SEC11C:
  • Sec11c Sec11c<tm1b(EUCOMM)Wtsi>

Animal Models for research

  • Taconic Biosciences Mouse Models for SEC11C

miRNA for SEC11C Gene

miRTarBase miRNAs that target SEC11C

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SEC11C

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SEC11C Gene

Localization for SEC11C Gene

Subcellular locations from UniProtKB/Swiss-Prot for SEC11C Gene

Microsome membrane. Single-pass type II membrane protein. Endoplasmic reticulum membrane. Single-pass type II membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SEC11C gene
Compartment Confidence
nucleus 2
endoplasmic reticulum 2
cytosol 2
plasma membrane 1
extracellular 1
cytoskeleton 1
mitochondrion 1
peroxisome 1
lysosome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
  • Nuclear membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SEC11C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IEA --
GO:0005787 signal peptidase complex IEA,IBA 21873635
GO:0005789 endoplasmic reticulum membrane IEA,TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SEC11C: view

Pathways & Interactions for SEC11C Gene

genes like me logo Genes that share pathways with SEC11C: view

Gene Ontology (GO) - Biological Process for SEC11C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006465 signal peptide processing IEA,IBA 21873635
GO:0006508 proteolysis IEA --
genes like me logo Genes that share ontologies with SEC11C: view

No data available for SIGNOR curated interactions for SEC11C Gene

Drugs & Compounds for SEC11C Gene

No Compound Related Data Available

Transcripts for SEC11C Gene

mRNA/cDNA for SEC11C Gene

2 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for SEC11C

Alternative Splicing Database (ASD) splice patterns (SP) for SEC11C Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b
SP1: - - - - - -
SP2: - - - - - - -
SP3: - - - - -
SP4: - - - -
SP5: - -
SP6:

Relevant External Links for SEC11C Gene

GeneLoc Exon Structure for
SEC11C

Expression for SEC11C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SEC11C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for SEC11C Gene

This gene is overexpressed in Nasal epithelium (42.3) and Salivary gland (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for SEC11C Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for SEC11C

SOURCE GeneReport for Unigene cluster for SEC11C Gene:

Hs.45107

Evidence on tissue expression from TISSUES for SEC11C Gene

  • Pancreas(4.7)
  • Nervous system(4.6)
  • Liver(2.6)
  • Spleen(2.4)
  • Kidney(2.4)
  • Thyroid gland(2.3)
genes like me logo Genes that share expression patterns with SEC11C: view

Primer products for research

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SEC11C Gene

Orthologs for SEC11C Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SEC11C Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia SEC11C 30
  • 99 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia SEC11C 30
  • 94 (a)
OneToOne
Dog
(Canis familiaris)
Mammalia SEC11C 29 30
  • 93.06 (n)
OneToOne
Mouse
(Mus musculus)
Mammalia Sec11c 29 16 30
  • 92.19 (n)
OneToOne
Cow
(Bos Taurus)
Mammalia SEC11C 29 30
  • 92.01 (n)
OneToOne
Rat
(Rattus norvegicus)
Mammalia Sec11c 29
  • 91.15 (n)
Oppossum
(Monodelphis domestica)
Mammalia SEC11C 30
  • 84 (a)
OneToOne
Chicken
(Gallus gallus)
Aves SEC11C 29 30
  • 85.69 (n)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia SEC11C 30
  • 95 (a)
OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia sec11c 29
  • 79.47 (n)
Fruit Fly
(Drosophila melanogaster)
Insecta twr 29 30
  • 67.43 (n)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003069 29
  • 66.08 (n)
Worm
(Caenorhabditis elegans)
Secernentea Y54E10BR.5 30
  • 68 (a)
OneToMany
CELE_Y54E10BR.5 29
  • 63.43 (n)
K. Lactis Yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E18261g 29
  • 54.82 (n)
Baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SEC11 29 30
  • 52.73 (n)
OneToMany
A. gosspyii yeast
(Eremothecium gossypii)
Saccharomycetes AGOS_ADR158W 29
  • 50.6 (n)
Thale Cress
(Arabidopsis thaliana)
eudicotyledons AT3G15710 29
  • 61.74 (n)
Barley
(Hordeum vulgare)
Liliopsida Hv.2895 29
Rice
(Oryza sativa)
Liliopsida Os.10990 29
Wheat
(Triticum aestivum)
Liliopsida Ta.6431 29
Corn
(Zea mays)
Liliopsida Zm.1761 29
Sea Squirt
(Ciona savignyi)
Ascidiacea CSA.5539 30
  • 78 (a)
OneToMany
Bread mold
(Neurospora crassa)
Ascomycetes NCU04519 29
  • 56.85 (n)
Fission Yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes sec11 29
  • 51.68 (n)
Sea Vase
(Ciona intestinalis)
Ascidiacea Cin.133 29
Species where no ortholog for SEC11C was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Zebrafish (Danio rerio)

Evolution for SEC11C Gene

ENSEMBL:
Gene Tree for SEC11C (if available)
TreeFam:
Gene Tree for SEC11C (if available)
Aminode:
Evolutionary constrained regions (ECRs) for SEC11C: view image
Alliance of Genome Resources:
Additional Orthologs for SEC11C

Paralogs for SEC11C Gene

Paralogs for SEC11C Gene

(4) SIMAP similar genes for SEC11C Gene using alignment to 2 proteins:

  • SC11C_HUMAN
  • K7EJQ7_HUMAN
genes like me logo Genes that share paralogs with SEC11C: view

Variants for SEC11C Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for SEC11C Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for SEC11C Gene

Variant ID Type Subtype PubMed ID
esv3304149 CNV mobile element insertion 20981092
esv3402573 CNV insertion 20981092

Variation tolerance for SEC11C Gene

Residual Variation Intolerance Score: 47.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.21; 4.76% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SEC11C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SEC11C
Leiden Open Variation Database (LOVD)
SEC11C

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for SEC11C Gene

Disorders for SEC11C Gene

MalaCards: The human disease database

(1) MalaCards diseases for SEC11C Gene - From: COP

Disorder Aliases PubMed IDs
malignant inflammatory fibrous histiocytoma
  • inflammatory mfh
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for SEC11C

genes like me logo Genes that share disorders with SEC11C: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SEC11C Gene

Publications for SEC11C Gene

  1. Signal peptidase complex 18, encoded by SEC11A, contributes to progression via TGF-α secretion in gastric cancer. (PMID: 23995782) Oue N … Yasui W (Oncogene 2014) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  3. Two subunits of the canine signal peptidase complex are homologous to yeast SEC11 protein. (PMID: 2188978) Shelness GS … Blobel G (The Journal of biological chemistry 1990) 2 3
  4. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  5. Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis. (PMID: 31536960) Moutaoufik MT … Babu M (iScience 2019) 3

Products for SEC11C Gene

Sources for SEC11C Gene