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Aliases for SDSL Gene

Aliases for SDSL Gene

  • Serine Dehydratase Like 2 3 5
  • L-Serine Dehydratase/L-Threonine Deaminase 3 4
  • L-Threonine Dehydratase 3 4
  • Serine Dehydratase-Like 2 3
  • Serine Dehydratase 2 3 4
  • L-Serine Deaminase 3 4
  • SDH 2 3 4
  • TDH 3 4
  • Serine Dehydratase Related Sequence 1 3
  • EC 4.3.1.19 4
  • EC 4.3.1.17 4
  • SDS-RS1 3
  • CSDH 3

External Ids for SDSL Gene

Previous GeneCards Identifiers for SDSL Gene

  • GC12P112273
  • GC12P112322
  • GC12P113860
  • GC12P110871

Summaries for SDSL Gene

GeneCards Summary for SDSL Gene

SDSL (Serine Dehydratase Like) is a Protein Coding gene. Diseases associated with SDSL include Subdural Empyema and Brain Compression. Among its related pathways are threonine degradation and Carbon metabolism. Gene Ontology (GO) annotations related to this gene include pyridoxal phosphate binding and L-threonine ammonia-lyase activity. An important paralog of this gene is SDS.

UniProtKB/Swiss-Prot for SDSL Gene

  • Has low serine dehydratase and threonine dehydratase activity.

Additional gene information for SDSL Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SDSL Gene

Genomics for SDSL Gene

GeneHancer (GH) Regulatory Elements for SDSL Gene

Promoters and enhancers for SDSL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I113421 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 569.8 +0.2 233 2.4 HDGF PKNOX1 ARID4B SIN3A IRF4 YY1 POLR2B ZNF766 E2F8 FOS SDSL RBM19 PLBD2 SLC8B1 SDS
GH12I113420 Enhancer 0.3 FANTOM5 574.7 -1.6 -1591 0.1 FOXA1 SDSL PLBD2 SLC8B1 SDS LOC105369989
GH12I113356 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE 20.9 -63.6 -63631 4 HDGF PKNOX1 ARNT MLX ARID4B SIN3A ZNF2 YY1 ZNF766 ZNF143 PLBD2 SLC8B1 RBM19 SDSL DDX54 RITA1 ENSG00000201208 RPL6 SDS LOC105369989
GH12I113417 Enhancer 1.3 FANTOM5 Ensembl ENCODE 31.3 -3.8 -3824 1 ELF3 FOXA2 ARID4B DNMT3B RAD21 RARA YY1 ATF7 THAP11 RXRA SDSL PLBD2 SLC8B1 SDS OAS2 OAS3 LOC105369989
GH12I113270 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 19.2 -150.2 -150199 2.3 ELF3 ARID4B SIN3A DMAP1 ZNF48 ZSCAN9 RAD21 EGR1 EGR2 CEBPB GC12M113256 SDSL RASAL1 RITA1 SLC8B1 RBM19 OAS2 OAS3 OAS1 PLBD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SDSL on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SDSL gene promoter:

Genomic Locations for SDSL Gene

Genomic Locations for SDSL Gene
chr12:113,422,237-113,438,277
(GRCh38/hg38)
Size:
16,041 bases
Orientation:
Plus strand
chr12:113,860,042-113,876,081
(GRCh37/hg19)

Genomic View for SDSL Gene

Genes around SDSL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDSL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDSL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SDSL Gene

Proteins for SDSL Gene

  • Protein details for SDSL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GA7-SDSL_HUMAN
    Recommended name:
    Serine dehydratase-like
    Protein Accession:
    Q96GA7

    Protein attributes for SDSL Gene

    Size:
    329 amino acids
    Molecular mass:
    34674 Da
    Cofactor:
    Name=pyridoxal 5-phosphate; Xref=ChEBI:CHEBI:597326;
    Quaternary structure:
    • Homodimer.

    Three dimensional structures from OCA and Proteopedia for SDSL Gene

neXtProt entry for SDSL Gene

Post-translational modifications for SDSL Gene

No data available for DME Specific Peptides for SDSL Gene

Domains & Families for SDSL Gene

Gene Families for SDSL Gene

Human Protein Atlas (HPA):
  • Enzymes
  • Predicted intracellular proteins
  • Predicted membrane proteins

Suggested Antigen Peptide Sequences for SDSL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96GA7

UniProtKB/Swiss-Prot:

SDSL_HUMAN :
  • Belongs to the serine/threonine dehydratase family.
Family:
  • Belongs to the serine/threonine dehydratase family.
genes like me logo Genes that share domains with SDSL: view

Function for SDSL Gene

Molecular function for SDSL Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=30 mM for serine; KM=7 mM for threonine;
UniProtKB/Swiss-Prot CatalyticActivity:
L-serine = pyruvate + NH(3).
UniProtKB/Swiss-Prot CatalyticActivity:
L-threonine = 2-oxobutanoate + NH(3).
UniProtKB/Swiss-Prot Function:
Has low serine dehydratase and threonine dehydratase activity.

Enzyme Numbers (IUBMB) for SDSL Gene

Phenotypes From GWAS Catalog for SDSL Gene

Gene Ontology (GO) - Molecular Function for SDSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003941 L-serine ammonia-lyase activity IEA --
GO:0004794 L-threonine ammonia-lyase activity IEA --
GO:0016829 lyase activity IEA --
GO:0030170 pyridoxal phosphate binding IEA --
genes like me logo Genes that share ontologies with SDSL: view
genes like me logo Genes that share phenotypes with SDSL: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDSL Gene

Localization for SDSL Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SDSL gene
Compartment Confidence
extracellular 5
cytosol 4
mitochondrion 2
plasma membrane 1
cytoskeleton 1
nucleus 1
endoplasmic reticulum 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for SDSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
GO:0070062 extracellular exosome HDA,IDA 23376485
genes like me logo Genes that share ontologies with SDSL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SDSL Gene

Pathways & Interactions for SDSL Gene

genes like me logo Genes that share pathways with SDSL: view

Gene Ontology (GO) - Biological Process for SDSL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006520 cellular amino acid metabolic process IEA --
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with SDSL: view

No data available for SIGNOR curated interactions for SDSL Gene

Drugs & Compounds for SDSL Gene

(6) Drugs for SDSL Gene - From: DrugBank and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Pyridoxal Phosphate Approved, Investigational Nutra Target, cofactor 17
Ammonia Approved Pharma 0
L-Threonine Approved Nutra 0
Pyruvic acid Approved, Investigational Nutra 0
2-Ketobutyric acid Experimental Pharma 0
genes like me logo Genes that share compounds with SDSL: view

Transcripts for SDSL Gene

Unigene Clusters for SDSL Gene

Serine dehydratase-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SDSL Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b
SP1: - -
SP2: - - -
SP3: - - - -
SP4: - -
SP5:
SP6: -

Relevant External Links for SDSL Gene

GeneLoc Exon Structure for
SDSL
ECgene alternative splicing isoforms for
SDSL

Expression for SDSL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SDSL Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SDSL Gene

This gene is overexpressed in Liver (x11.6).

Protein differential expression in normal tissues from HIPED for SDSL Gene

This gene is overexpressed in Liver (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SDSL Gene



Protein tissue co-expression partners for SDSL Gene

NURSA nuclear receptor signaling pathways regulating expression of SDSL Gene:

SDSL

SOURCE GeneReport for Unigene cluster for SDSL Gene:

Hs.337594

Evidence on tissue expression from TISSUES for SDSL Gene

  • Liver(4.2)
  • Lung(4.2)
  • Nervous system(2.8)
genes like me logo Genes that share expression patterns with SDSL: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDSL Gene

Orthologs for SDSL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SDSL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SDSL 33 34
  • 99.19 (n)
cow
(Bos Taurus)
Mammalia SDSL 33 34
  • 84.65 (n)
dog
(Canis familiaris)
Mammalia SDSL 33 34
  • 84.45 (n)
rat
(Rattus norvegicus)
Mammalia Sdsl 33
  • 81.19 (n)
mouse
(Mus musculus)
Mammalia Sdsl 33 16 34
  • 81.14 (n)
oppossum
(Monodelphis domestica)
Mammalia SDSL 34
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SDSL 34
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves SDSL 33 34
  • 69.93 (n)
lizard
(Anolis carolinensis)
Reptilia SDSL 34
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sdsl 33
  • 63.85 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC68790 33
zebrafish
(Danio rerio)
Actinopterygii LOC563642 33
  • 58.84 (n)
SDSL 34
  • 54 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5154 33
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CHA1 33 34 36
  • 44.3 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C00440g 33
  • 42.65 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 45 (a)
OneToMany
Species where no ortholog for SDSL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SDSL Gene

ENSEMBL:
Gene Tree for SDSL (if available)
TreeFam:
Gene Tree for SDSL (if available)

Paralogs for SDSL Gene

Paralogs for SDSL Gene

(1) SIMAP similar genes for SDSL Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with SDSL: view

Variants for SDSL Gene

Sequence variations from dbSNP and Humsavar for SDSL Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000047804 -- 113,434,078(+) G/A intron_variant
rs1000071921 -- 113,431,862(+) C/G intron_variant
rs1000078800 -- 113,433,795(+) G/A/T intron_variant
rs1000181880 -- 113,427,391(+) G/A/T intron_variant
rs1000383268 -- 113,421,789(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SDSL Gene

Variant ID Type Subtype PubMed ID
nsv519540 CNV gain+loss 19592680
nsv1118505 CNV duplication 24896259
esv3892265 CNV gain 25118596
esv3630792 CNV gain 21293372

Variation tolerance for SDSL Gene

Residual Variation Intolerance Score: 78% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.46; 64.19% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SDSL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDSL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SDSL Gene

Disorders for SDSL Gene

MalaCards: The human disease database

(3) MalaCards diseases for SDSL Gene - From: DISEASES

Disorder Aliases PubMed IDs
subdural empyema
  • subdural abscess
brain compression
  • compression of brain
vertebral artery occlusion
  • occlusion and stenosis of vertebral artery
- elite association - COSMIC cancer census association via MalaCards
Search SDSL in MalaCards View complete list of genes associated with diseases

Additional Disease Information for SDSL

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with SDSL: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SDSL Gene

Publications for SDSL Gene

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson SL … O'Brien SJ (PloS one 2010) 3 44 58
  2. A catalytic mechanism that explains a low catalytic activity of serine dehydratase like-1 from human cancer cells: crystal structure and site-directed mutagenesis studies. (PMID: 18342636) Yamada T … Takusagawa F (Biochimica et biophysica acta 2008) 3 4 58
  3. Enzymatic and biochemical properties of a novel human serine dehydratase isoform. (PMID: 16580895) Ogawa H … Kobayashi M (Biochimica et biophysica acta 2006) 2 3 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y … Zou H (Journal of proteomics 2014) 4 58

Products for SDSL Gene

Sources for SDSL Gene

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