SDR42E1P5 Gene (Pseudogene)

Short Chain Dehydrogenase/Reductase Family 42E, Member 1 Pseudogene 5

GC02P102412
GIFtS:
4
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Aliases for SDR42E1P5 Gene

Aliases for SDR42E1P5 Gene

  • Short Chain Dehydrogenase/Reductase Family 42E, Member 1 Pseudogene 5 2 3 5
  • SDR42E1P5 5

External Ids for SDR42E1P5 Gene

Summaries for SDR42E1P5 Gene

GeneCards Summary for SDR42E1P5 Gene

SDR42E1P5 (Short Chain Dehydrogenase/Reductase Family 42E, Member 1 Pseudogene 5) is a Pseudogene.

Additional gene information for SDR42E1P5 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for SDR42E1P5 Gene

Genomics for SDR42E1P5 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for SDR42E1P5 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J102391 Enhancer 0.7 Ensembl ENCODE 0.4 -19.5 -19459 0.6 VEZF1 FOSL1 NFE2 FOXA1 MAFG NFIB HMBOX1 NFIC EMSY IL18RAP lnc-IL1RL1-3 SDR42E1P5 IL18R1
GH02J102399 Enhancer 0.6 Ensembl 0.4 -10.2 -10159 2.4 ZNF395 PKNOX1 CEBPG ATF4 MEIS2 ZNF639 ATF3 ZNF24 TRIM24 FOXJ2 ENSG00000234389 SDR42E1P5 IL18RAP lnc-IL1RL1-3 IL18R1
GH02J102392 Enhancer 0.3 Ensembl 0.4 -18.9 -18859 0.2 ZFP64 ENSG00000234389 IL18RAP lnc-IL1RL1-3 SDR42E1P5 IL18R1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around SDR42E1P5 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for SDR42E1P5 Gene

Latest Assembly
chr2:102,411,160-102,412,111
(GRCh38/hg38)
Size:
952 bases
Orientation:
Plus strand

Previous Assembly
chr2:103,027,620-103,028,571
(GRCh37/hg19 by Entrez Gene)
Size:
952 bases
Orientation:
Plus strand

chr2:103,027,703-103,028,568
(GRCh37/hg19 by Ensembl)
Size:
866 bases
Orientation:
Plus strand

Genomic View for SDR42E1P5 Gene

Genes around SDR42E1P5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SDR42E1P5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SDR42E1P5 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SDR42E1P5 Gene

Proteins for SDR42E1P5 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for SDR42E1P5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SDR42E1P5 Gene

Domains & Families for SDR42E1P5 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for SDR42E1P5 Gene

Function for SDR42E1P5 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for SDR42E1P5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SDR42E1P5 Gene

Localization for SDR42E1P5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SDR42E1P5 Gene

Pathways & Interactions for SDR42E1P5 Gene

PathCards logo

SuperPathways for SDR42E1P5 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SDR42E1P5 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for SDR42E1P5 Gene

Drugs & Compounds for SDR42E1P5 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for SDR42E1P5 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

mRNA/cDNA for SDR42E1P5 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SDR42E1P5 Gene

No ASD Table

Relevant External Links for SDR42E1P5 Gene

GeneLoc Exon Structure for
SDR42E1P5

Expression for SDR42E1P5 Gene

Products:

  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SDR42E1P5 Gene

Orthologs for SDR42E1P5 Gene

Evolution for SDR42E1P5 Gene

ENSEMBL:
Gene Tree for SDR42E1P5 (if available)
TreeFam:
Gene Tree for SDR42E1P5 (if available)

No data available for Orthologs for SDR42E1P5 Gene

Paralogs for SDR42E1P5 Gene

No data available for Paralogs for SDR42E1P5 Gene

Variants for SDR42E1P5 Gene

Additional Variant Information for SDR42E1P5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SDR42E1P5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SDR42E1P5 Gene

Disorders for SDR42E1P5 Gene

No disorders were found for SDR42E1P5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SDR42E1P5 Gene

Publications for SDR42E1P5 Gene

No publications were found for SDR42E1P5 Gene.

No data available for Mastermind for SDR42E1P5 Gene

Products for SDR42E1P5 Gene

Sources for SDR42E1P5 Gene